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严重急性呼吸综合征冠状病毒2型主要蛋白酶与HIV蛋白酶抑制剂对接结构的分子动力学模拟

Molecular dynamics simulation of docking structures of SARS-CoV-2 main protease and HIV protease inhibitors.

作者信息

Cardoso Wesley B, Mendanha Sebastião A

机构信息

Instituto de Física, Universidade Federal de Goiás, 74.690-900, Goiânia, Goiás, Brazil.

出版信息

J Mol Struct. 2021 Feb 5;1225:129143. doi: 10.1016/j.molstruc.2020.129143. Epub 2020 Aug 23.

DOI:10.1016/j.molstruc.2020.129143
PMID:32863430
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7443253/
Abstract

In this paper we investigate 10 different HIV protease inhibitors (HPIs) as possible repurposed-drugs candidates against SARS-CoV-2. To this end, we execute molecular docking and molecular dynamics simulations. The data demonstrated that, despite their molecular differences, all HPIs presented a similar behavior for the parameters analyzed, with the exception of Nelfinavir that showed better results for most of the molecular dynamics parameters in comparison with the N3 inhibitor.

摘要

在本文中,我们研究了10种不同的HIV蛋白酶抑制剂(HPIs)作为抗SARS-CoV-2的潜在重新利用药物候选物。为此,我们进行了分子对接和分子动力学模拟。数据表明,尽管它们存在分子差异,但除奈非那韦外,所有HPIs在所分析的参数上表现出相似的行为,与N3抑制剂相比,奈非那韦在大多数分子动力学参数上显示出更好的结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/eb6f6cffed03/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/6e98dd63b500/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/778af6acff37/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/2f80413d662b/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/ac9bd408c0c1/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/ea5d0032ed99/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/4251347013e3/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/eb6f6cffed03/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/6e98dd63b500/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/778af6acff37/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/2f80413d662b/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/ac9bd408c0c1/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/ea5d0032ed99/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/4251347013e3/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/884a/7443253/eb6f6cffed03/gr7_lrg.jpg

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2
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Nature. 2020 Jun;582(7811):289-293. doi: 10.1038/s41586-020-2223-y. Epub 2020 Apr 9.
3
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7
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10
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Life Sci. 2020 Jul 15;253:117592. doi: 10.1016/j.lfs.2020.117592. Epub 2020 Mar 25.
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5
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