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间歇性喂养的海洋硬骨鱼 Sparus aurata 的全脑转录组学。

Whole brain transcriptomics of intermittently fed individuals of the marine teleost Sparus aurata.

机构信息

Department of Ichthyology and Aquatic Environment, School of Agricultural Sciences, Fitokou str., 38445 Volos, Greece.

Department of Animal Science, School of Animal Biosciences, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece.

出版信息

Comp Biochem Physiol Part D Genomics Proteomics. 2020 Dec;36:100737. doi: 10.1016/j.cbd.2020.100737. Epub 2020 Aug 21.

Abstract

A major challenge in fish physiology is to understand the mechanisms underlying the transcriptomic responses of fish brain to food deprivation. Differential gene expression analysis identified in total 2240 transcripts that presented >2-fold change (adjusted p < 0.01) between each treatment and the control group (C). The identity of the transcripts was obtained with annotation against multiple public databases and they were grouped according to their expression patterns. The gene ontology terms that were substantially affected were identified by functional annotation analysis. Genes related to ion transport, cell cycle and cell adhesion were mainly regulated during fasting and refeeding. These findings contribute to identify key indicators for the molecular basis of brain functions during periods of starvation in gilthead seabream.

摘要

鱼类生理学的一个主要挑战是理解鱼类大脑对食物剥夺的转录组反应的机制。差异基因表达分析总共鉴定了 2240 个转录本,它们在每个处理组与对照组(C)之间呈现 >2 倍的变化(调整后的 p < 0.01)。通过与多个公共数据库的注释获得转录本的身份,并根据其表达模式进行分组。通过功能注释分析确定了受显著影响的基因本体术语。与离子转运、细胞周期和细胞黏附相关的基因主要在禁食和再喂食期间受到调节。这些发现有助于确定在金头鲷饥饿期间大脑功能的分子基础的关键指标。

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