Department of Ophthalmology, Kings College London, London, United Kingdom.
KCL Department of Twin Research and Genetic Epidemiology, London, United Kingdom.
Invest Ophthalmol Vis Sci. 2020 Sep 1;61(11):20. doi: 10.1167/iovs.61.11.20.
The purpose of this study was to identify genetic variants on chromosome X associated with intraocular pressure (IOP) and determine if they possess any sex-specific effects.
Association analyses were performed across chromosome X using 102,407 participants from the UK Biobank. Replication and validation analyses were conducted in an additional 6599 participants from the EPIC-Norfolk cohort, and an independent 331,682 participants from the UK Biobank.
We identified three loci associated with IOP at genomewide significance (P < 5 × 10-8), located within or near the following genes: MXRA5 (rs2107482, P = 7.1 × 10-11), GPM6B (rs66819623, P = 6.9 × 10-10), NDP, and EFHC2 (rs12558081, P = 4.9 × 10-11). Alleles associated with increased IOP were also associated with increased risk for primary open-angle glaucoma in an independent sample. Finally, our results indicate that chromosome X genetics most likely do not illicit sex-specific effects on IOP.
In this study, we report the results of genomewide levels of association of three loci on chromosome X with IOP, and provide a framework to include chromosome X in large-scale genomewide association analyses for complex phenotypes.
本研究旨在鉴定与眼内压(IOP)相关的 X 染色体上的遗传变异,并确定它们是否具有任何性别特异性效应。
使用英国生物库中的 102407 名参与者,在 X 染色体上进行了关联分析。在 EPIC-Norfolk 队列的另外 6599 名参与者和英国生物库中的独立的 331682 名参与者中进行了复制和验证分析。
我们在全基因组显著水平上确定了三个与 IOP 相关的基因座(P < 5 × 10-8),位于以下基因内或附近:MXRA5(rs2107482,P = 7.1 × 10-11),GPM6B(rs66819623,P = 6.9 × 10-10),NDP 和 EFHC2(rs12558081,P = 4.9 × 10-11)。与IOP 增加相关的等位基因也与独立样本中原发性开角型青光眼的风险增加相关。最后,我们的结果表明,X 染色体遗传对 IOP 不太可能产生性别特异性影响。
在这项研究中,我们报告了三个与 X 染色体上 IOP 相关的基因座在全基因组关联水平上的结果,并提供了一个框架,以便在大规模全基因组关联分析中纳入 X 染色体来分析复杂表型。