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一种有效的抗冻保护剂和适度的变性剂:乙二醇对蛋白质稳定性的独特作用。

An able-cryoprotectant and a moderate denaturant: distinctive character of ethylene glycol on protein stability.

机构信息

Department of Biotechnology & Bioinformatics, School of Life Sciences, University of Hyderabad, Hyderabad, India.

出版信息

J Biomol Struct Dyn. 2022 Feb;40(2):820-832. doi: 10.1080/07391102.2020.1819422. Epub 2020 Sep 21.

DOI:10.1080/07391102.2020.1819422
PMID:32954952
Abstract

Osmolytes are known to stabilize proteins against denaturing conditions. Ethylene glycol (EG), however, shows a distinctive effect on α-lactalbumin (α-LA) that it stabilizes the protein against cold-induced denaturation, whereas it destabilizes during heat denaturation. The replica exchange molecular dynamics (REMD) simulation of α-LA in the presence of EG shows that EG denatures the protein at higher temperatures whereas it retards the denaturation at sub-zero temperature. Representative structures of α-LA were selected from REMD trajectories at three different temperature conditions (240, 300 and 340 K) with and without EG, and classical molecular dynamics (MD) simulations were performed. The results suggest that the presence of water around α-LA is more at lower temperatures; however, water around the hydrophobic residues is reduced with the addition of EG at sub-zero temperature. The partition coefficient of EG showed that the binding of EG with hydrophobic residues was higher at lower temperatures. Preferential interaction parameters at different temperatures were calculated based on the mean distribution (Γ) and Kirkwood-Buff integral () methods. Γ shows a larger positive value at 240 K compared to higher temperatures. shows positive values at lower temperatures, whereas it becomes negative at above 280 K. These results indicate that the preferential binding of EG with α-LA is more at sub-zero temperature compared to higher temperature conditions. Thus, the study suggests that the preferential binding of EG reduces the hydrophobic hydration of α-LA at lower temperatures, and stabilizes the protein against cold denaturation. However, the preferential binding of EG at higher temperature drives the folding equilibrium towards the denatured state.Communicated by Ramaswamy H. Sarma.

摘要

渗透物已知可稳定变性条件下的蛋白质。然而,乙二醇(EG)对α-乳白蛋白(α-LA)表现出独特的作用,它稳定蛋白质免受冷诱导变性,而在热变性过程中使其不稳定。在存在 EG 的情况下对 α-LA 进行 replica exchange 分子动力学(REMD)模拟表明,EG 在较高温度下使蛋白质变性,而在零下温度下则延迟变性。从 REMD 轨迹中选择了三个不同温度条件(240、300 和 340 K)下有和没有 EG 的 α-LA 的代表性结构,并进行了经典分子动力学(MD)模拟。结果表明,在较低温度下,α-LA 周围的水更多;然而,随着 EG 的加入,在零下温度下,疏水性残基周围的水减少。EG 的分配系数表明,EG 与疏水性残基的结合在较低温度下更高。根据平均分布(Γ)和 Kirkwood-Buff 积分()方法计算了不同温度下的优先相互作用参数。Γ 在 240 K 时的正值大于较高温度时的正值。在较低温度下为正值,而在 280 K 以上时变为负值。这些结果表明,与较高温度条件相比,EG 与 α-LA 的优先结合在较低温度下更多。因此,该研究表明,EG 的优先结合减少了α-LA 在较低温度下的疏水性水合作用,并稳定了蛋白质免受冷变性。然而,EG 在较高温度下的优先结合促使折叠平衡向变性状态移动。由 Ramaswamy H. Sarma 传达。

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