Department of Genetics and Pathology, International Hereditary Cancer Center, Pomeranian Medical University in Szczecin, Szczecin, Poland.
Medical Genetics, Faculty of Health, School of Biomedical Sciences and Pharmacy, University of Newcastle and the Hunter Medical Research Institute, Newcastle, Australia.
Eur J Cancer Prev. 2020 Nov;29(6):511-519. doi: 10.1097/CEJ.0000000000000633.
Evaluation of the prevalence of POT1, ACD, and TERF2IP mutations among Polish melanoma patients. A cohort of 60 patients from melanoma-prone families, 1500 unselected cases and 1500 controls were genotyped. Methodology included Sanger sequencing, in-silico software predilection, and TaqMan assays. We identified three nonsynonymous variants: POT1 c.903 G>T; TERF2IP c.970 A>G; and ACD c.1544 T>C and a splice site variant ACD c.645 G>A. The c.903 G>T was predicted to be pathogenic according to PolyPhen-2, benign according to Mutation Taster, PROVEAN, AGVGD, and SIFT. The c.645 G>A was defined as disease caused by Mutation Taster and Human Splicing Finder and as variant of unknown significance by ClinVar. The other detected variants were described as benign. The c.903 G>T variant was present in two unselected cases and one control [P = 0.57, odds ratio (OR) = 2.00]; the c.645 G>A variant was not detected among the unselected cases and the controls; the c.970 A>G variant was present in 110 cases and 133 controls (P = 0.14, OR = 0.81); the c.1544 T>C variant was present in 687 cases and 642 controls (P = 0.11, OR = 1.07). We found no loss of heterozygosity of the c.903 G>T, c.970 A>G, and c.645 G>A variants. C.645 G>A variant had no effect on splicing or expression. The changes in POT1 c.903 G>T and ACD c.645 G>A can be classified as rare variants of unknown significance, the other variants appear to be polymorphisms. Germline mutations in POT1, ACD, and TERF2IP are infrequent among Polish melanoma patients.
评估波兰黑素瘤患者中 POT1、ACD 和 TERF2IP 突变的患病率。对来自黑素瘤易感家族的 60 名患者、1500 名未选择的病例和 1500 名对照进行了基因分型。方法包括 Sanger 测序、计算机软件倾向分析和 TaqMan 检测。我们发现了三个非同义变体:POT1 c.903 G>T;TERF2IP c.970 A>G;和 ACD c.1544 T>C 和一个剪接位点变体 ACD c.645 G>A。根据 PolyPhen-2,POT1 c.903 G>T 被预测为致病性,根据 Mutation Taster、PROVEAN、AGVGD 和 SIFT 被预测为良性。ACD c.645 G>A 被定义为 Mutation Taster 和 Human Splicing Finder 引起的疾病,被 ClinVar 定义为意义不明的变体。其他检测到的变体被描述为良性。POT1 c.903 G>T 变体存在于两个未选择的病例和一个对照中 [P = 0.57,比值比(OR)= 2.00];ACD c.645 G>A 变体在未选择的病例和对照中未检测到;ACD c.1544 T>C 变体存在于 687 例病例和 642 例对照中(P = 0.11,OR = 1.07)。我们没有发现 POT1 c.903 G>T、ACD c.970 A>G 和 c.645 G>A 变体的杂合性丢失。ACD c.645 G>A 变体对剪接或表达没有影响。POT1 c.903 G>T 和 ACD c.645 G>A 的变化可归类为意义不明的罕见变体,其他变体似乎为多态性。POT1、ACD 和 TERF2IP 的种系突变在波兰黑素瘤患者中并不常见。