一个患有小脑共济失调、智力障碍和4型失衡综合征的伊朗家系中的一种新型纯合变异。

A novel homozygous variant in an Iranian pedigree with cerebellar ataxia, mental retardation, and dysequilibrium syndrome type 4.

作者信息

Mohamadian Malihe, Ghandil Pegah, Naseri Mohsen, Bahrami Afsane, Momen Ali Akbar

机构信息

Department of Molecular Medicine, Birjand University of Medical Sciences, Birjand, Iran.

Diabetes Research Center, Health Research Institute, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.

出版信息

J Clin Lab Anal. 2020 Nov;34(11):e23484. doi: 10.1002/jcla.23484. Epub 2020 Jul 17.

Abstract

BACKGROUND

Cerebellar ataxia, mental retardation, and dysequilibrium (CAMRQ) syndrome is a rare and early-onset neurodevelopmental disorder. Four subtypes of this syndrome have been identified, which are clinically and genetically different. To date, altogether 32 patients have been described with ATP8A2 mutations and phenotypic features assigned to CAMRQ type 4. Herein, three additional patients in an Iranian consanguineous family with non-progressive cerebellar ataxia, severe hypotonia, intellectual disability, dysarthria, and cerebellar atrophy have been identified.

METHODS

Following the thorough clinical examination, consecutive detections including chromosome karyotyping, chromosomal microarray analysis, and whole exome sequencing (WES) were performed on the proband. The sequence variants derived from WES interpreted by a standard bioinformatics pipeline. Pathogenicity assessment of candidate variant was done by in silico analysis. The familial cosegregation of the WES finding was carried out by PCR-based Sanger sequencing.

RESULTS

A novel homozygous missense variant (c.1339G > A, p.Gly447Arg) in the ATP8A2 gene was identified and completely segregated with the phenotype in the family. In silico analysis and structural modeling revealed that the p.G477R substitution is deleterious and induced undesired effects on the protein stability and residue distribution in the ligand-binding pocket. The novel sequence variant occurred within an extremely conserved subregion of the ATP-binding domain.

CONCLUSION

Our findings expand the spectrum of ATP8A2 mutations and confirm the reported genotype-phenotype correlation. These results could improve genetic counseling and prenatal diagnosis in families with clinical presentations related to CAMRQ4 syndrome.

摘要

背景

小脑共济失调、智力发育迟缓与平衡失调(CAMRQ)综合征是一种罕见的早发性神经发育障碍。该综合征已鉴定出四种亚型,在临床和遗传方面存在差异。迄今为止,共描述了32例具有ATP8A2突变且具有CAMRQ 4型表型特征的患者。在此,在一个伊朗近亲家庭中又发现了三名患者,他们患有非进行性小脑共济失调、严重肌张力减退、智力残疾、构音障碍和小脑萎缩。

方法

在先证者经过全面临床检查后,进行了包括染色体核型分析、染色体微阵列分析和全外显子组测序(WES)在内的连续检测。由标准生物信息学流程解读来自WES的序列变异。通过计算机分析对候选变异的致病性进行评估。通过基于PCR的桑格测序对WES结果进行家族共分离分析。

结果

在ATP8A2基因中鉴定出一个新的纯合错义变异(c.1339G>A,p.Gly447Arg),并且该变异与家族中的表型完全共分离。计算机分析和结构建模表明,p.G477R替换是有害的,并且对蛋白质稳定性和配体结合口袋中的残基分布产生了不良影响。这个新的序列变异发生在ATP结合域的一个高度保守的亚区域内。

结论

我们的研究结果扩展了ATP8A2突变的谱,并证实了已报道的基因型-表型相关性。这些结果可以改善与CAMRQ4综合征临床表现相关家庭的遗传咨询和产前诊断。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d042/7676196/48981b3647df/JCLA-34-e23484-g001.jpg

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