Xu P C, He W F, Cheng B
Department of Burns and Plastic Surgery, General Hospital of Southern Theater Command of PLA, Guangzhou 510010, China.
State Key Laboratory of Trauma, Burns and Combined Injury, Institute of Burn Research, the First Affiliated Hospital of Army Medical University (the Third Military Medical University), Chongqing Key Laboratory for Disease Proteomics, Chongqing 400038, China.
Zhonghua Shao Shang Za Zhi. 2020 Oct 20;36(10):915-922. doi: 10.3760/cma.j.cn501120-20200707-00341.
To analyze target genes of human platelet-rich plasma (PRP) in regulating and controlling human epidermal stem cells (ESCs). (1) The discarded foreskin tissues were collected from 6 male patients of the First Affiliated Hospital of Army Medical University after urological surgery. The patients aged 5 to 25 years with good health and without urinary system infection. Human ESCs were cultivated using quick attachment method, and were subjected to morphological observation and identification. Venous blood sample in the volume of 40 mL was collected from a female healthy volunteer (aged 29 years) of General Hospital of Southern Theater Command of PLA, and PRP was extracted by second centrifugation method. (2) The successfully cultured primary human ESCs were divided into control group and PRP group according to the random number table, with 3 wells in each group. The cells in control group were not specially treated. In PRP group, PRP was added to the ESC medium to achieve final volume fraction of 2.5% after the cells were adhered for 12 hours. RNA was extracted, and transcriptome sequencing and data analysis of human ESCs of two groups were performed using RNA sequencing technology. Using the false discovery rate less than 0.05 and the fold change more than or equal to 4 as the standard, the differentially expressed genes were screened by Dr. Tom data mining system. Gene ontology (GO) enrichment analysis was performed on the obtained differentially expressed genes to find out the GO entries with significant enrichment. Then Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway annotation analysis was used to further analyze the biological processes or metabolic pathways in which differentially expressed genes might be involved. Finally, the genes related to re-epithelialization and significantly differentially expressed were selected, and the differential expression of genes was verified by real-time fluorescent quantitative reverse transcription polymerase chain reaction (RT-PCR). Data were statistically analyzed with independent-samples test. (1) The cultured cells were cloned with a paving stone-like shape and positive rate of CD49f of 95.132% and CD71 of 0.006%, which proved that the primary culture of ESCs was successful. (2) The quality control data analysis showed that the selected samples had better quality and higher sequence alignment rate, which met the requirements of sequencing. (3) Sequencing data showed that there were a total of 449 differentially expressed genes between the two groups, including 354 up-regulated genes and 95 down-regulated genes. Further cluster analysis determined that there were 18 significantly up-regulated genes and 5 significantly down-regulated genes between the two groups. GO enrichment analysis and KEGG pathway annotation analysis showed that the significantly differentially expressed genes were mainly enriched in the epidermis construction and keratinization process, which also might be related to interleukin 17 signaling pathway. (4) Keratin 19, keratin 10, and S100A7 genes which were related to the process of re-epithelialization and significantly differentially expressed were selected for verification. Real-time fluorescent quantitative RT-PCR showed that compared with those of control group, the mRNA expressions of keratin 19 and S100A7 of cells in PRP group were significantly increased (=10.270, 5.690, <0.01), while the mRNA expression of keratin 10 was significantly decreased (=7.306, <0.01), which was consistent with the result of sequencing data. PRP regulates function of human ESCs and promotes wound re-epithelialization involving transcriptional regulation of multiple genes, including keratin 19, keratin 10, and S100A7. In-depth exploration of the possible regulatory network of PRP affecting human ESCs will provide the basis for its subsequent clinical application.
分析富血小板血浆(PRP)调控人表皮干细胞(ESCs)的靶基因。(1)收集陆军军医大学第一附属医院6例泌尿外科手术后废弃的包皮组织。患者年龄5至25岁,身体健康,无泌尿系统感染。采用快速贴壁法培养人ESCs,并进行形态学观察与鉴定。采集中国人民解放军南部战区总医院一名29岁女性健康志愿者40 mL静脉血样,采用二次离心法提取PRP。(2)将成功培养的原代人ESCs按随机数字表法分为对照组和PRP组,每组3孔。对照组细胞不做特殊处理。PRP组在细胞贴壁12小时后,向ESC培养基中加入PRP,使其终体积分数达到2.5%。提取RNA,采用RNA测序技术对两组人ESCs进行转录组测序和数据分析。以错误发现率小于0.05且倍数变化大于或等于4为标准,通过Dr. Tom数据挖掘系统筛选差异表达基因。对获得的差异表达基因进行基因本体(GO)富集分析,找出显著富集的GO条目。然后采用京都基因与基因组百科全书(KEGG)通路注释分析进一步分析差异表达基因可能参与的生物学过程或代谢途径。最后,选择与再上皮化相关且差异表达显著的基因,通过实时荧光定量逆转录聚合酶链反应(RT-PCR)验证基因的差异表达。数据采用独立样本t检验进行统计学分析。(1)培养的细胞呈铺路石样克隆,CD49f阳性率为95.132%,CD71阳性率为0.006%,证明ESCs原代培养成功。(2)质量控制数据分析表明,所选样本质量较好,序列比对率较高,符合测序要求。(3)测序数据显示,两组间共有449个差异表达基因,其中上调基因354个,下调基因95个。进一步聚类分析确定两组间有18个显著上调基因和5个显著下调基因。GO富集分析和KEGG通路注释分析表明,差异表达显著的基因主要富集在表皮构建和角质化过程中,也可能与白细胞介素17信号通路有关。(4)选择与再上皮化过程相关且差异表达显著的角蛋白19、角蛋白10和S100A7基因进行验证。实时荧光定量RT-PCR结果显示,与对照组相比,PRP组细胞角蛋白19和S100A7的mRNA表达显著升高(t = 10.270,5.690,P < 0.01),而角蛋白10的mRNA表达显著降低(t = 7.306,P < 0.01),与测序数据结果一致。PRP通过调控多个基因(包括角蛋白19、角蛋白10和S100A7)的转录来调节人ESCs的功能并促进伤口再上皮化。深入探究PRP影响人ESCs的可能调控网络将为其后续临床应用提供依据。