Holsbø Einar, Olsen Karina Standahl
Department of Computer Science, UiT The Arctic University of Norway, Tromsø, Norway.
Department of Community Medicine, UiT The Arctic University of Norway, Tromsø, Norway.
Front Oncol. 2020 Oct 15;10:575461. doi: 10.3389/fonc.2020.575461. eCollection 2020.
Breast cancer patients with metastatic disease have a higher incidence of deaths from breast cancer than patients with early-stage cancers. Recent findings suggest that there are differences in immune cell function between metastatic and non-metastatic cases, even years before diagnosis. We have analyzed whole blood gene expression by Illumina bead chips in blood samples taken using the PAXgene blood collection system up to two years before diagnosis. The final study sample included 197 breast cancer cases and 197 age-matched controls. We defined a causal directed acyclic graph to guide a Bayesian data analysis to estimate the risk of metastasis associated with the expression of all genes and with relevant sets of genes. We ranked genes and gene sets according to the sign probability for excess risk. Among the screening detected cancers, 82% were without metastasis, compared to 53% of between-screening detected cancers. Among the highest ranking genes and gene sets associated with metastasis risk, we identified plasmacytiod dentritic cell function, the SLC22 family of transporters, and glutamine metabolism as potential links between the immune system and metastasis. We conclude that there may be potentially wide-reaching differences in blood gene expression profiles between metastatic and non-metastatic breast cancer cases up to two years before diagnosis, which warrants future study.
患有转移性疾病的乳腺癌患者比早期癌症患者因乳腺癌死亡的发生率更高。最近的研究结果表明,即使在诊断前数年,转移性和非转移性病例之间的免疫细胞功能也存在差异。我们使用PAXgene血液采集系统在诊断前两年内采集的血样中,通过Illumina珠芯片分析了全血基因表达。最终的研究样本包括197例乳腺癌病例和197例年龄匹配的对照。我们定义了一个因果有向无环图,以指导贝叶斯数据分析,以估计与所有基因及相关基因集表达相关的转移风险。我们根据超额风险的符号概率对基因和基因集进行排序。在筛查发现的癌症中,82%没有转移,而在两次筛查之间发现的癌症中这一比例为53%。在与转移风险相关的排名最高的基因和基因集中,我们确定浆细胞样树突状细胞功能、SLC22转运蛋白家族和谷氨酰胺代谢是免疫系统与转移之间的潜在联系。我们得出结论,在诊断前两年内,转移性和非转移性乳腺癌病例之间的血液基因表达谱可能存在广泛差异,这值得未来进一步研究。