Nakasako Juiki, Okuyama Hisashi, Ohba Shinya, Takahashi Jun-Ichi
Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan.
Biological Laboratory, Faculty of Education, Nagasaki University, Nagasaki, Japan.
Mitochondrial DNA B Resour. 2020 Nov 11;5(3):3739-3740. doi: 10.1080/23802359.2020.1833774.
Giant water bugs (genus and ) are well known species from aquatic habitats throughout the world's subtropical and tropical areas. Only one species of the is distributed in Japan. has been designated as second category rare species according Law for Conservation of Endangered Species of Wild Fauna and Flora in Japan, in 2019. We analyzed, for the first time, the complete mitochondrial genomes of the giant water bug from Japan using next-generation sequencing. The mitochondrial genome was a circular and 15,579 bp molecule that included 13 protein-coding genes (PCGs), 22 tRNA genes, and two ribosomal RNA genes, along with one AT-rich control region. The AT content value was 69.55%. The heavy strand was predicted to have nine PCGs and 15 tRNA genes, whereas the light strand was predicted to contain four PCGs, seven tRNA genes, and two rRNA genes. Start codons were variable for all PCGs: four ATA, three ATC, four ATG, two ATT genes as the start codon. Stop codons were of two types: TAA for 12 genes and TAG for one gene. Incomplete stop codon T was identified. The molecular phylogenetic relationship, inferred using 13 PCGs, was consistent with that reported in previous studies, which predicted a sister relationship to the genus .
大田鳖(属和)是分布于全球亚热带和热带地区水生栖息地的知名物种。在日本,该属只有一个物种分布。根据日本《野生动物濒危物种保护法》,该物种于2019年被指定为第二类珍稀物种。我们首次使用下一代测序技术分析了来自日本的大田鳖的完整线粒体基因组。线粒体基因组是一个环状的15579 bp分子,包含13个蛋白质编码基因(PCGs)、22个tRNA基因和两个核糖体RNA基因,以及一个富含AT的控制区。AT含量值为69.55%。重链预计有9个PCGs和15个tRNA基因,而轻链预计包含4个PCGs、7个tRNA基因和2个rRNA基因。所有PCGs的起始密码子各不相同:4个ATA、3个ATC、4个ATG、2个ATT基因作为起始密码子。终止密码子有两种类型:12个基因的TAA和1个基因的TAG。发现了不完全终止密码子T。使用13个PCGs推断的分子系统发育关系与先前研究报道的一致,该研究预测与属为姐妹关系。