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氧化还原调节低复杂度结构域的自缔合。

Redox-mediated regulation of low complexity domain self-association.

机构信息

Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390-9152, United States; Institute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555, Japan.

Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390-9152, United States.

出版信息

Curr Opin Genet Dev. 2021 Apr;67:111-118. doi: 10.1016/j.gde.2020.12.006. Epub 2021 Jan 14.

DOI:10.1016/j.gde.2020.12.006
PMID:33454579
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8084912/
Abstract

Eukaryotic cells express thousands of protein domains long believed to function in the absence of molecular order. These intrinsically disordered protein (IDP) domains are typified by gibberish-like repeats of only a limited number of amino acids that we refer to as domains of low sequence complexity. A decade ago, it was observed that these low complexity (LC) domains can undergo phase transition out of aqueous solution to form either liquid-like droplets or hydrogels. The self-associative interactions responsible for phase transition involve the formation of specific cross-β structures that are unusual in being labile to dissociation. Here we give evidence that the LC domains of two RNA binding proteins, ataxin-2 and TDP43, form cross-β interactions that specify biologically relevant redox sensors.

摘要

真核细胞表达数千种蛋白质结构域,这些结构域长期以来被认为在没有分子秩序的情况下发挥作用。这些固有无序的蛋白质(IDP)结构域的特点是只有有限数量的氨基酸组成的类似胡言乱语的重复,我们称之为低序列复杂度结构域。十年前,人们观察到这些低复杂度(LC)结构域可以在离开水相的情况下发生相变,形成类似液体的液滴或水凝胶。负责相变的自缔合相互作用涉及到形成特定的交叉-β结构,这些结构在解离方面不稳定,这在通常情况下是不常见的。在这里,我们提供的证据表明,两种 RNA 结合蛋白,ataxin-2 和 TDP43 的 LC 结构域形成交叉-β相互作用,指定了具有生物学相关性的氧化还原传感器。

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本文引用的文献

1
Redox-mediated regulation of an evolutionarily conserved cross-β structure formed by the TDP43 low complexity domain.氧化还原调节由 TDP43 低复杂度结构域形成的进化保守的跨β结构。
Proc Natl Acad Sci U S A. 2020 Nov 17;117(46):28727-28734. doi: 10.1073/pnas.2012216117. Epub 2020 Nov 3.
2
Maintaining the balance of TDP-43, mitochondria, and autophagy: a promising therapeutic strategy for neurodegenerative diseases.维持 TDP-43、线粒体和自噬的平衡:一种有前途的神经退行性疾病治疗策略。
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Dynamic structural order of a low-complexity domain facilitates assembly of intermediate filaments.
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The Role of Methionine Residues in the Regulation of Liquid-Liquid Phase Separation.甲硫氨酸残基在调控液-液相分离中的作用。
Biomolecules. 2021 Aug 21;11(8):1248. doi: 10.3390/biom11081248.
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Roles of Phase Separation for Cellular Redox Maintenance.相分离在细胞氧化还原维持中的作用。
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低复杂度结构域的动态结构有序性促进中间丝的组装。
Proc Natl Acad Sci U S A. 2020 Sep 22;117(38):23510-23518. doi: 10.1073/pnas.2010000117. Epub 2020 Sep 9.
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Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain.FUS 低复杂度结构域液-液相分离的分子相互作用。
Nat Struct Mol Biol. 2019 Jul;26(7):637-648. doi: 10.1038/s41594-019-0250-x. Epub 2019 Jul 1.
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Cryo-EM structures of four polymorphic TDP-43 amyloid cores.四种 TDP-43 淀粉样纤维核心多态性的冷冻电镜结构。
Nat Struct Mol Biol. 2019 Jul;26(7):619-627. doi: 10.1038/s41594-019-0248-4. Epub 2019 Jun 24.
6
Redox State Controls Phase Separation of the Yeast Ataxin-2 Protein via Reversible Oxidation of Its Methionine-Rich Low-Complexity Domain.氧化还原状态通过其富含蛋氨酸的低复杂度结构域的可逆氧化控制酵母 Ataxin-2 蛋白的液-液相分离。
Cell. 2019 Apr 18;177(3):711-721.e8. doi: 10.1016/j.cell.2019.02.044. Epub 2019 Apr 11.
7
Yeast Ataxin-2 Forms an Intracellular Condensate Required for the Inhibition of TORC1 Signaling during Respiratory Growth.酵母 Ataxin-2 形成细胞内凝聚物,这对于呼吸生长过程中 TORC1 信号的抑制是必需的。
Cell. 2019 Apr 18;177(3):697-710.e17. doi: 10.1016/j.cell.2019.02.043. Epub 2019 Apr 11.
8
Phase Separation, Protein Disorder, and Enhancer Function.相分离、蛋白质无序和增强子功能。
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Cell Rep. 2018 Mar 20;22(12):3251-3264. doi: 10.1016/j.celrep.2018.02.097.
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Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.FUS蛋白原纤维的结构及其与低复杂性结构域的自组装和相分离的相关性。
Cell. 2017 Oct 19;171(3):615-627.e16. doi: 10.1016/j.cell.2017.08.048. Epub 2017 Sep 21.