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堇菜科(Violaceae)植物的完整叶绿体基因组序列

The complete chloroplast genome sequence of (Violaceae).

作者信息

Duan Chunyan, Zhang Kay, Duan YiZhong

机构信息

Agricultural College, Henan University of Science and Technology, Luoyang, China.

College of Life Sciences, Yulin University, Yulin, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 9;5(3):2727-2728. doi: 10.1080/23802359.2020.1788456.

Abstract

belongs to the family Violaceae. It has been widely used for a traditional Chinese herb with antibacterial activity and is grown as an early spring ornamental species in China. In this study, we determined the complete chloroplast genome sequence of which forms a circular structure. The whole chloroplast genome was 156,501 bp in length, consisting of a pair of inverted repeats (IR) of 26,404 bp, a large single-copy (LSC) region of 85,689 bp, and a small single-copy (SSC) region of 18,004 bp. We annotated 131 genes, including 84 coding sequences, 8 rRNA sequences, 37 tRNA sequences and 2 pesudogenes. Among the annotated genes, 17 genes contained one or two introns. Furthermore, a phylogenetic analysis revealed that and clustered together as sisters to other Violaceae species.

摘要

属于堇菜科。它作为一种具有抗菌活性的传统中药已被广泛使用,并且在中国作为早春观赏植物种植。在本研究中,我们确定了其完整的叶绿体基因组序列,该序列形成环状结构。整个叶绿体基因组长度为156,501 bp,由一对26,404 bp的反向重复序列(IR)、一个85,689 bp的大单拷贝(LSC)区域和一个18,004 bp的小单拷贝(SSC)区域组成。我们注释了131个基因,包括84个编码序列、8个rRNA序列、37个tRNA序列和2个假基因。在注释的基因中,17个基因含有一个或两个内含子。此外,系统发育分析表明,与其他堇菜科物种聚在一起,形成姐妹分支。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8714/7781978/d7d414a020e6/TMDN_A_1788456_F0001_C.jpg

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