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美国德克萨斯州奥斯汀市城市荒野保护区中局部空间尺度微生物群落的功能冗余表明存在随机过程。

Functional redundancy in local spatial scale microbial communities suggests stochastic processes at an urban wilderness preserve in Austin, TX, USA.

机构信息

Department of Ecological Science, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands.

Department of Biology, St Edward's University, 3001 S Congress Ave, Austin, TX 78704, Austin, TX, USA.

出版信息

FEMS Microbiol Lett. 2021 Feb 12;368(3). doi: 10.1093/femsle/fnab010.

Abstract

Empirical evidence supports selection of soil microbial communities by edaphic properties across large spatial scales; however, less is known at smaller spatial scales. The goal of this research was to evaluate relationships between ecosystem characteristics and bacterial community structure/function at broad taxonomic resolutions in soils across small spatial scales. We employed 16S rRNA gene sequencing, community-level physiological profiling and soil chemical analysis to address this goal. We found weak relationships between gradients in soil characteristics and community structure/function. Specific operational taxonomic units did not respond to edaphic variation, but Acidobacteria, Bacteroidetes and Nitrospirae shifted their relative abundances. High metabolic diversity within the bacterial communities was observed despite general preference of Tween 40/80. Carbon metabolism patterns suggest dominance of functional specialists at our times of measurement. Pairwise comparison of carbon metabolism patterns indicates high levels of functional redundancy. Lastly, at broad taxonomic scales, community structure and function weakly covary with edaphic properties. This evidence suggests that stochasticity or unmeasured environmental gradients may be influential in bacterial community assembly in soils at small spatial scales.

摘要

实证证据支持在大空间尺度上通过土壤特性选择土壤微生物群落;然而,在较小的空间尺度上,这方面的了解较少。本研究的目的是在小空间尺度上的土壤中,在广泛的分类分辨率下评估生态系统特征与细菌群落结构/功能之间的关系。我们采用 16S rRNA 基因测序、群落水平生理分析和土壤化学分析来实现这一目标。我们发现土壤特征梯度与群落结构/功能之间的关系较弱。特定的操作分类单位对土壤变化没有反应,但 Acidobacteria、Bacteroidetes 和 Nitrospirae 的相对丰度发生了变化。尽管普遍偏爱吐温 40/80,但仍观察到细菌群落内高代谢多样性。碳代谢模式表明,在我们的测量时间内,功能专家占主导地位。碳代谢模式的两两比较表明功能冗余水平很高。最后,在广泛的分类尺度上,群落结构和功能与土壤特性弱相关。这一证据表明,在小空间尺度上,土壤中细菌群落的组装可能受到随机性或未测量环境梯度的影响。

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