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从太平洋牡蛎(Crassostrea gigas)中鉴定一种脂肪酸结合蛋白:药物和毒理学意义。

Characterization of a fatty acid-binding protein from the Pacific oyster (Crassostrea gigas): pharmaceutical and toxicological implications.

机构信息

Programa de Pós-Graduação em Bioquímica, Departamento de Bioquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil.

Laboratório de Biomarcadores de Contaminação Aquática e Imunoquímica, Universidade Federal de Santa Catarina, Florianópolis, SC, 88040-900, Brazil.

出版信息

Environ Sci Pollut Res Int. 2021 Jun;28(22):27811-27822. doi: 10.1007/s11356-021-12645-y. Epub 2021 Jan 30.

DOI:10.1007/s11356-021-12645-y
PMID:33517529
Abstract

Pharmaceuticals and their metabolites constitute a class of xenobiotics commonly found in aquatic environments which may cause toxic effects in aquatic organisms. Several different lipophilic molecules, including some pharmaceuticals, can bind to fatty acid-binding proteins (FABPs), a group of evolutionarily related cytoplasmic proteins that belong to the intracellular lipid-binding protein (iLBP) family. An oyster FABP genome-wide investigation was not available until a recent study on gene organization, protein structure, and phylogeny of Crassostrea gigas iLBPs. Higher transcript levels of the C. gigas FABP2 gene were found after exposure to sewage and pharmaceuticals. Because of its relevance as a potential biomarker of aquatic contamination, in this study, recombinant FABP2 from C. gigas (CgFABP2) was successfully cloned, expressed, and purified, and in vitro and in silico assays were performed using lipids and pharmaceuticals. This is the first characterization of a protein from the iLBP family in C. gigas. Homology modeling and molecular docking were used to evaluate the binding affinities of natural ligands (palmitic, oleic, and arachidonic acids) and pharmaceuticals (ibuprofen, sodium diclofenac, and acetaminophen). Among the tested fatty acids, CgFABP2 showed preference for palmitic acid. The selected pharmaceuticals presented a biphasic-binding mode, suggesting a different binding affinity with a preference for diclofenac. Therefore, the approach using circular dichroism and in silico data might be useful for ligand-binding screening in an invertebrate model organism.

摘要

药物及其代谢物是水生环境中常见的一类异生物质,可能对水生生物产生毒性作用。包括一些药物在内的几种不同的亲脂性分子可以与脂肪酸结合蛋白(FABP)结合,FABP 是一组进化相关的细胞质蛋白,属于细胞内脂质结合蛋白(iLBP)家族。直到最近,一项关于中国蛤蜊 Crassostrea gigas iLBPs 的基因组织、蛋白质结构和系统发育的研究,才对中国蛤蜊 FABP 进行了全基因组调查。在接触污水和药物后,中国蛤蜊 FABP2 基因的转录水平显著升高。由于其作为水生污染潜在生物标志物的相关性,在本研究中,成功地克隆、表达和纯化了中国蛤蜊 FABP2(CgFABP2),并使用脂质和药物进行了体外和计算机模拟研究。这是首次对中国蛤蜊 iLBP 家族的蛋白质进行了表征。同源建模和分子对接用于评估天然配体(棕榈酸、油酸和花生四烯酸)和药物(布洛芬、双氯芬酸钠和对乙酰氨基酚)的结合亲和力。在测试的脂肪酸中,CgFABP2 对棕榈酸表现出偏好。所选药物呈现出两相结合模式,表明与双氯芬酸钠具有不同的结合亲和力。因此,使用圆二色性和计算机数据的方法可能有助于筛选无脊椎动物模型生物中的配体结合。

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