Azimuth Environmental Consulting, Inc., 642 Welham Road, Barrie, ON L4N 9A1, Canada.
Precision Biomonitoring Inc., Orchard Park, Suite #226, 5420 Highway 6 North, Guelph, ON N1H 6J2, Canada.
Genome. 2021 Mar;64(3):299-310. doi: 10.1139/gen-2020-0043. Epub 2021 Feb 4.
Environmental DNA (eDNA) is gaining traction in conservation ecology as a powerful tool for detecting species at risk. We developed a quantitative polymerase chain reaction assay to detect a DNA amplicon fragment of the mitochondrial nicotinamide adenine dinucleotide locus of the Blanding's turtle () for detecting overwintering individuals. Seventy-eight water samples were collected from 17 wetland sites in Ontario, Canada. We used traditional field data to identify a priori positive and negative control sites. Fifty percent of positive control sites amplified. Detection was related to the number of individuals estimated from field observations in at least one region surveyed. Positive control sites had lower total dissolved solids and electrical conductivity in relation to negative control sites. Shedding rates were within the same order of magnitude for brumating and active turtles. We recommend collecting additional samples at a larger number of locations to maximize detection. Recommended sampling design changes may overshadow the additional effects of water chemistry and low eDNA shedding rates. eDNA offers tremendous potential to practitioners conducting species at risk assessments in environmental consulting by providing a faster, more efficient method of detection compared with traditional surveys.
环境 DNA(eDNA)作为一种检测濒危物种的强大工具,在保护生态学中越来越受到重视。我们开发了一种定量聚合酶链反应(PCR)检测方法,用于检测 Blanding 龟(Emydoidea blandingii)的线粒体烟酰胺腺嘌呤二核苷酸(NADH)位点的 DNA 扩增片段,以检测越冬个体。我们从加拿大安大略省的 17 个湿地采集了 78 个水样。我们使用传统的野外数据来识别先验的阳性和阴性对照位点。50%的阳性对照位点发生了扩增。检测结果与至少一个调查区域的实地观察估计的个体数量有关。阳性对照点的总溶解固体和电导率均低于阴性对照点。冬眠和活动的海龟的脱落率处于同一数量级。我们建议在更多地点采集更多样本,以最大限度地提高检测率。建议的采样设计更改可能会掩盖水化学和低 eDNA 脱落率的额外影响。与传统调查相比,eDNA 通过提供更快、更高效的检测方法,为从事环境咨询中濒危物种评估的从业者提供了巨大的潜力。