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利用转录组和 qRT-PCR 分析了解 Tsushimanus 成年 Pagophilus 的化学感觉基因。

Insights into chemosensory genes of Pagiophloeus tsushimanus adults using transcriptome and qRT-PCR analysis.

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, China; College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu, China.

Forest Station of Shanghai, Shanghai, China.

出版信息

Comp Biochem Physiol Part D Genomics Proteomics. 2021 Mar;37:100785. doi: 10.1016/j.cbd.2020.100785. Epub 2021 Feb 3.

Abstract

Pagiophloeus tsushimanus is a new, destructive, and monophagous weevil pest that thrives on Cinnamomum camphora, found in Shanghai. The functions of chemosensory genes involved in the host location and intraspecific communication of P. tsushimanus remain unknown. The male-female transcriptomes of P. tsushimanus adults were assembled using Illumina sequencing, and we focused on all chemosensory genes in transcriptomes. In general, 58,088 unigenes with a mean length of 1018.19 bp were obtained. In total, 39 odorant binding proteins (OBPs), 10 chemosensory proteins (CSPs), 22 olfactory receptors (ORs), 16 gustatory receptors (GRs), eight ionotropic receptors (IRs), and five sensory neuron membrane proteins (SNMPs) were identified. PtsuOBPs comprised four subfamilies (20 Minus-C, one Plus-C, two Dimer, and 15 Classic). Both PtsuOBPs and PtsuCSPs contained a highly conserved sequence motif of cysteine residues. PtsuORs including one olfactory receptor co-receptors (Ptsu/Orco) comprised seven predicted transmembrane domains. Phylogenetic analysis revealed that PtsuOBPs, PtsuCSPs, and PtsuORs in P. tsushimanus exhibited low homology compared to other insect species. The results of tissue- and sex-specific expression patterns indicated that PtsuOBPs and PtsuORs were highly abundant in the antennae; whereas, PtsuCSPs were not only highly abundant in antennae, but also abdominal apexes, wings, and legs. In conclusion, these results enrich the gene database of P. tsushimanus, which may serve as a basis for identifying novel targets to disrupt olfactory key genes and may provide a reverse validation method to identify attractants for formulating potential eco-friendly control strategies for this pest.

摘要

日本樟红天牛是一种新的、具有破坏性的、专食性的天牛害虫,在上海以樟科植物为食。日本樟红天牛在定位宿主和种内交流过程中涉及的化学感觉基因的功能尚不清楚。我们使用 Illumina 测序技术对日本樟红天牛成虫的雌雄转录组进行了组装,并重点研究了转录组中的所有化学感觉基因。总的来说,获得了 58088 个平均长度为 1018.19bp 的 unigenes。总共鉴定出 39 个气味结合蛋白(OBP)、10 个化学感受蛋白(CSP)、22 个嗅觉受体(OR)、16 个味觉受体(GR)、8 个离子型受体(IR)和 5 个感觉神经元膜蛋白(SNMP)。PtsuOBPs 包含四个亚家族(20 个 Minus-C、1 个 Plus-C、2 个 Dimer 和 15 个 Classic)。PtsuOBPs 和 PtsuCSPs 都包含一个高度保守的半胱氨酸残基序列模体。PtsuORs 包括一个嗅觉受体共受体(Ptsu/Orco),包含七个预测的跨膜结构域。系统发育分析表明,与其他昆虫物种相比,日本樟红天牛的 PtsuOBPs、PtsuCSPs 和 PtsuORs 同源性较低。组织和性别特异性表达模式的结果表明,PtsuOBPs 和 PtsuORs 在触角中高度丰富;而 PtsuCSPs 不仅在触角中高度丰富,而且在腹部顶端、翅膀和腿部中也高度丰富。总之,这些结果丰富了日本樟红天牛的基因数据库,可为识别破坏嗅觉关键基因的新靶标提供依据,并为制定针对该害虫的潜在生态友好型控制策略提供引诱剂的反向验证方法。

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