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生物超分子体系:将线索整合到响应中。

Biosupramolecular Systems: Integrating Cues into Responses.

机构信息

University of Geneva, Department of Organic Chemistry, Faculty of Science, NCCR Chem Biol, 30 Quai Ernest Ansermet, CH-1205 Geneva, Switzerland.

出版信息

J Am Chem Soc. 2021 Mar 31;143(12):4467-4482. doi: 10.1021/jacs.0c12970. Epub 2021 Feb 10.

Abstract

Life is orchestrated by biomolecules interacting in complex networks of biological circuitry with emerging function. Progress in different areas of chemistry has made the design of systems that can recapitulate elements of such circuitry possible. Herein we review prominent examples of networks, the methodologies available to translate an input into various outputs, and speculate on potential applications and directions for the field. The programmability of nucleic acid hybridization has inspired applications beyond its function in heredity. At the circuitry level, DNA provides a powerful platform to design dynamic systems that respond to nucleic acid input sequences with output sequences through diverse logic gates, enabling the design of ever more complex circuitry. In order to interface with more diverse biomolecular inputs and yield outputs other than oligonucleotide sequences, an array of nucleic acid conjugates have been reported that can engage proteins as their input and yield a turn-on of enzymatic activity, a bioactive small molecule, or morphological changes in nanoobjects. While the programmability of DNA makes it an obvious starting point to design circuits, other biosupramolecular interactions have also been demonstrated, and harnessing progress in protein design is bound to deliver further integration of macromolecules in artificial circuits.

摘要

生命是由生物分子在具有新兴功能的生物电路复杂网络中相互作用而精心编排的。化学不同领域的进展使得设计可以再现这种电路元件的系统成为可能。在此,我们回顾了网络的突出范例、将输入转换为各种输出的可用方法,并推测了该领域的潜在应用和方向。核酸杂交的可编程性激发了超越其在遗传中功能的应用。在电路层面上,DNA 为设计动态系统提供了强大的平台,这些系统可以通过各种逻辑门响应核酸输入序列,并输出序列,从而能够设计出更复杂的电路。为了与更多种类的生物分子输入进行接口,并产生除寡核苷酸序列以外的输出,已经报道了一系列核酸缀合物,它们可以将蛋白质作为输入,并产生酶活性、生物活性小分子或纳米物体形态变化的开启。虽然 DNA 的可编程性使其成为设计电路的明显起点,但其他生物超分子相互作用也已经得到证明,并且利用蛋白质设计的进展必将进一步将大分子整合到人工电路中。

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