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波兰灵缇犬遗传变异性评估中的系谱与分子分析

Pedigree and Molecular Analyses in the Assessment of Genetic Variability of the Polish Greyhound.

作者信息

Goleman Małgorzata, Balicki Ireneusz, Radko Anna, Rozempolska-Rucińska Iwona, Zięba Grzegorz

机构信息

Department of Ethology and Wildlife Management, University of Life Sciences, Akademicka 13, 20-950 Lublin, Poland.

Department and Clinic of Animal Surgery, University of Life Sciences, Głęboka 30, 20-612 Lublin, Poland.

出版信息

Animals (Basel). 2021 Jan 31;11(2):353. doi: 10.3390/ani11020353.

Abstract

The aim of the study was to assess the genetic variability of the Polish Greyhound population based on pedigree analysis and molecular DNA testing and to determine the degree of relatedness among individuals in the population. Pedigree data of 912 Polish Greyhounds recorded in pedigree books since they were opened for this breed were analyzed. For molecular testing, DNA was obtained from cheek swabs taken from 235 dogs of the tested breed. A panel of 21 markers (Short Tandem Repeat-STR) was used. The mean inbreeding determined for the Polish Greyhound population based on pedigree analyses was low and amounted to 11.8%, but as many as 872 individuals of the 912 dogs in the studied population were inbred. A total of 83 founders (at least one unknown parent) were identified, among which 27 founders had both unknown parents. Full-sibling groups consisted of 130 individuals, with a minimum and maximum litter size of 2 and 16, respectively. The average litter size was 5.969. Gene diversity calculated based on the mean kinship matrix was 0.862 and the population mean kinship was 0.138. The founder genome equivalent based on the mean kinship matrix was 3.61; the founder genome surviving level was 12.34; the mean Ne was estimated at 21.76; and the Ne/N ratio was 0.135. The FIS inbreeding coefficient for 21 STR was negative, and the mean FIS value for all loci had a low negative value (-0.018). These values suggest a low level of inbreeding in the examined breed as well as the avoidance of mating related animals.

摘要

本研究的目的是基于系谱分析和分子DNA检测评估波兰灵缇犬种群的遗传变异性,并确定种群中个体间的亲缘程度。分析了自系谱簿为该品种开放以来记录的912只波兰灵缇犬的系谱数据。为进行分子检测,从235只受试品种犬的颊拭子中获取DNA。使用了一组21个标记(短串联重复序列-STR)。基于系谱分析确定的波兰灵缇犬种群平均近亲繁殖率较低,为11.8%,但在研究种群的912只犬中多达872只为近亲繁殖个体。共识别出83个奠基者(至少有一个未知亲本),其中27个奠基者的双亲均未知。全同胞组由130个个体组成,窝仔数最小为2只,最大为16只,平均窝仔数为5.969只。基于平均亲缘关系矩阵计算的基因多样性为0.862,种群平均亲缘关系为0.138。基于平均亲缘关系矩阵的奠基者基因组等效值为3.61;奠基者基因组存活水平为12.34;平均有效种群大小估计为21.76;有效种群大小与实际种群大小之比为0.135。21个STR的FIS近亲繁殖系数为负,所有位点的平均FIS值具有较低的负值(-0.018)。这些值表明所研究品种的近亲繁殖水平较低,并且避免了近亲交配。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e834/7911804/0ada48c0150b/animals-11-00353-g001.jpg

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