Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138;
Department of Surgery, Beth Israel Deaconess Medical Center, Boston, MA 02115.
Proc Natl Acad Sci U S A. 2021 Mar 2;118(9). doi: 10.1073/pnas.2025512118.
HLA-C arose during evolution of pregnancy in the great apes 10 to 15 million years ago. It has a dual function on placental extravillous trophoblasts (EVTs) as it contributes to both tolerance and immunity at the maternal-fetal interface. The mode of its regulation is of considerable interest in connection with the biology of pregnancy and pregnancy abnormalities. First-trimester primary EVTs in which HLA-C is highly expressed, as well as JEG3, an EVT model cell line, were employed. Single-cell RNA-seq data and quantitative PCR identified high expression of the transcription factor ELF3 in those cells. Chromatin immunoprecipitation (ChIP)-PCR confirmed that both ELF3 and MED1 bound to the proximal HLA-C promoter region. However, binding of RFX5 to this region was absent or severely reduced, and the adjacent HLA-B locus remained closed. Expression of HLA-C was inhibited by ELF3 small interfering RNAs (siRNAs) and by wrenchnolol treatment. Wrenchnolol is a cell-permeable synthetic organic molecule that mimics ELF3 and is relatively specific for binding to ELF3's coactivator, MED23, as our data also showed in JEG3. Moreover, the ELF3 gene is regulated by a superenhancer that spans more than 5 Mb, identified by assay for transposase-accessible chromatin using sequencing (ATAC-seq), as well as by its sensitivity to (+)-JQ1 (inhibitor of BRD4). ELF3 bound to its own promoter, thus creating an autoregulatory feedback loop that establishes expression of ELF3 and HLA-C in trophoblasts. Wrenchnolol blocked binding of MED23 to ELF3, thus disrupting the positive-feedback loop that drives ELF3 expression, with down-regulation of HLA-C expression as a consequence.
HLA-C 是在 1000 万至 1500 万年前的大型类人猿进化为妊娠过程中产生的。它在胎盘绒毛外滋养细胞 (EVT) 上具有双重功能,因为它有助于母体-胎儿界面的耐受和免疫。其调节方式与妊娠和妊娠异常的生物学密切相关。我们使用了高表达 HLA-C 的第一孕期原发性 EVT 以及 EVT 模型细胞系 JEG3。单细胞 RNA-seq 数据和定量 PCR 鉴定出这些细胞中转录因子 ELF3 的高表达。染色质免疫沉淀 (ChIP)-PCR 证实 ELF3 和 MED1 均与 HLA-C 启动子近端区域结合。然而,RFX5 与该区域的结合缺失或严重减少,并且相邻的 HLA-B 基因座保持关闭。ELF3 的表达被 ELF3 小干扰 RNA (siRNA) 和 wrenchnolol 处理抑制。wrenchnolol 是一种具有渗透性的合成有机分子,可模拟 ELF3,并且相对特异性地与 ELF3 的共激活因子 MED23 结合,正如我们的数据也在 JEG3 中显示的那样。此外,ELF3 基因受到跨越超过 5 Mb 的超级增强子的调节,通过使用测序的转座酶可及染色质测定法 (ATAC-seq) 以及其对 (+)-JQ1(BRD4 抑制剂) 的敏感性来鉴定。ELF3 与自身启动子结合,从而创建一个自身反馈回路,该回路建立了滋养细胞中 ELF3 和 HLA-C 的表达。wrenchnolol 阻止了 MED23 与 ELF3 的结合,从而破坏了驱动 ELF3 表达的正反馈回路,导致 HLA-C 表达下调。