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[大麦育种与遗传研究中的二代测序技术]

[NGS sequencing in barley breeding and genetic studies].

作者信息

Rozanova I V, Khlestkina E K

机构信息

Federal Research Center the N.I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR), St. Petersburg, Russia Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.

出版信息

Vavilovskii Zhurnal Genet Selektsii. 2020 Jul;24(4):348-355. doi: 10.18699/VJ20.627.

Abstract

Barley (Hordeum vulgare L.) is the one of the most important cereal species used as food and feed crops, as well as for malting and alcohol production. At the end of the last century, traditional breeding techniques were complemented by the use of DNA markers. Molecular markers have also been used extensively for molecular genetic mapping and QTL analysis. In 2012, the barley genome sequencing was completed, which provided a broad range of new opportunities - from a more efficient search for candidate genes controlling economically important traits to genomic selection. The review summarizes the results of the studies performed after barley genome sequencing, which discovered new areas of barley genetics and breeding with high throughput screening and genotyping methods. During this period, intensive studies aimed at identification of barley genomic loci associated with economically important traits have been carried out; online databases and tools for working with barley genomic data and their deposition have appeared and are being replenished. In recent years, GWAS analysis has been used for large-scale phenotypegenotype association studies, which has been widely used in barley since 2010 due to the developed SNP-arrays, as well as genotyping methods based on direct NGS sequencing of selected fractions of the genome. To date, more than 80 papers have been published that describe the results of the GWAS analysis in barley. SNP identification associated with economically important traits and their transformation into CAPS or KASP markers convenient for screening selection material significantly expands the possibilities of marker-assisted selection of barley. In addition, the currently available information on potential target genes and the quality of the whole barley genome sequence provides a good base for applying genome editing technologies to create material for the creation of varieties with desired properties.

摘要

大麦(Hordeum vulgare L.)是最重要的谷物种类之一,用作粮食和饲料作物,以及用于麦芽制造和酒精生产。上世纪末,DNA标记的使用补充了传统育种技术。分子标记也已广泛用于分子遗传图谱绘制和QTL分析。2012年,大麦基因组测序完成,这提供了广泛的新机会——从更有效地寻找控制经济重要性状的候选基因到基因组选择。本文综述了大麦基因组测序后进行的研究结果,这些研究利用高通量筛选和基因分型方法发现了大麦遗传学和育种的新领域。在此期间,开展了旨在鉴定与经济重要性状相关的大麦基因组位点的深入研究;出现并不断补充了用于处理大麦基因组数据及其存储的在线数据库和工具。近年来,全基因组关联研究(GWAS)分析已用于大规模表型-基因型关联研究,自2010年以来,由于开发的SNP芯片以及基于对基因组选定部分进行直接NGS测序的基因分型方法,GWAS分析在大麦中得到了广泛应用。迄今为止,已发表了80多篇描述大麦GWAS分析结果的论文。与经济重要性状相关的SNP鉴定以及将其转化为便于筛选选择材料的CAPS或KASP标记,显著扩大了大麦标记辅助选择的可能性。此外,目前关于潜在靶基因的可用信息以及整个大麦基因组序列的质量为应用基因组编辑技术创造具有所需特性的品种材料提供了良好基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497e/7716553/9e0bbad98abf/VJGB-24-20627-Fig1.jpg

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