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转录组分析 Nodal - 和 BMP 相关基因在幼体海星 Parvulastra exigua(Asterinidae)发育过程中的作用。

Transcriptomic analysis of Nodal - and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae).

机构信息

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia.

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia.

出版信息

Mar Genomics. 2021 Oct;59:100857. doi: 10.1016/j.margen.2021.100857. Epub 2021 Mar 4.

Abstract

The molecular mechanisms underlying development of the pentameral body of adult echinoderms are poorly understood but are important to solve with respect to evolution of a unique body plan that contrasts with the bilateral body plan of other deuterostomes. As Nodal and BMP2/4 signalling is involved in axis formation in larvae and development of the echinoderm body plan, we used the developmental transcriptome generated for the asterinid seastar Parvulastra exigua to investigate the temporal expression patterns of Nodal and BMP2/4 genes from the embryo and across metamorphosis to the juvenile. For echinoderms, the Asteroidea represents the basal-type body architecture with a distinct (separated) ray structure. Parvulastra exigua has lecithotrophic development forming the juvenile soon after gastrulation providing ready access to the developing adult stage. We identified 39 genes associated with the Nodal and BMP2/4 network in the P. exigua developmental transcriptome. Clustering analysis of these genes resulted in 6 clusters with similar temporal expression patterns across development. A co-expression analysis revealed genes that have similar expression profiles as Nodal and BMP2/4. These results indicated genes that may have a regulatory relationship in patterning morphogenesis of the juvenile seastar. Developmental RNA-seq analyses of Parvulastra exigua show changes in Nodal and BMP2/4 signalling genes across the metamorphic transition. We provide the foundation for detailed analyses of this cascade in the evolution of the unusual pentameral echinoderm body and its deuterostome affinities.

摘要

成年棘皮动物五腕幼虫体发育的分子机制知之甚少,但对于解决独特身体计划的进化问题非常重要,因为这与其他后口动物的双侧身体计划形成鲜明对比。由于 Nodal 和 BMP2/4 信号在幼虫的轴形成和棘皮动物身体计划的发育中起作用,我们使用为 Asterinid 海星 Parvulastra exigua 生成的发育转录组,研究了 Nodal 和 BMP2/4 基因从胚胎到变态到幼体的时空表达模式。对于棘皮动物来说,Asteroidea 代表了具有独特(分离)射线结构的基本体型结构。Parvulastra exigua 具有卵黄营养发育,在原肠胚形成后不久就形成幼体,为发育中的成体阶段提供了便利。我们在 P. exigua 发育转录组中鉴定出 39 个与 Nodal 和 BMP2/4 网络相关的基因。对这些基因的聚类分析导致 6 个具有相似时空表达模式的簇。共表达分析揭示了与 Nodal 和 BMP2/4 具有相似表达谱的基因。这些结果表明,这些基因可能在幼体海星形态发生的模式形成中具有调节关系。Parvulastra exigua 的发育 RNA-seq 分析显示,Nodal 和 BMP2/4 信号基因在变态过渡过程中发生变化。我们为详细分析这个级联在不寻常的五腕棘皮动物体及其后口动物亲缘关系的进化中的作用提供了基础。

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