Sorbonne Université, Inserm, Center of Research in Myology, G.H. Pitié-Salpêtrière, Paris, France.
AP-HP Sorbonne Université, Neuromyology Department, Centre de référence maladies neuromusculaires Nord/Est/Ile-de-France (FILNEMUS network), Institut de Myologie, G.H. Pitié-Salpêtrière, Paris, France.
J Neuromuscul Dis. 2021;8(3):419-439. doi: 10.3233/JND-200596.
Variants in the LMNA gene, encoding lamins A/C, are responsible for a growing number of diseases, all of which complying with the definition of rare diseases. LMNA-related disorders have a varied phenotypic expression with more than 15 syndromes described, belonging to five phenotypic groups: Muscular Dystrophies, Neuropathies, Cardiomyopathies, Lipodystrophies and Progeroid Syndromes. Overlapping phenotypes are also reported. Linking gene and variants with phenotypic expression, disease mechanisms, and corresponding treatments is particularly challenging in laminopathies. Treatment recommendations are limited, and very few are variant-based.
The Treatabolome initiative aims to provide a shareable dataset of existing variant-specific treatment for rare diseases within the Solve-RD EU project. As part of this project, we gathered evidence of specific treatments for laminopathies via a systematic literature review adopting the FAIR (Findable, Accessible, Interoperable, and Reusable) guidelines for scientific data production.
Treatments for LMNA-related conditions were systematically collected from MEDLINE and Embase bibliographic databases and clinical trial registries (Cochrane Central Registry of Controlled Trials, clinicaltrial.gov and EudraCT). Two investigators extracted and analyzed the literature data independently. The included papers were assessed using the Oxford Centre for Evidence-Based Medicine 2011 Levels of Evidence.
From the 4783 selected articles by a systematic approach, we identified 78 papers for our final analysis that corresponded to the profile of data defined in the inclusion and exclusion criteria. These papers include 2 guidelines/consensus papers, 4 meta-analyses, 14 single-arm trials, 15 case series, 13 cohort studies, 21 case reports, 8 expert reviews and 1 expert opinion. The treatments were summarized electronically according to significant phenome-genome associations. The specificity of treatments according to the different laminopathic phenotypical presentations is variable.
We have extracted Treatabolome-worthy treatment recommendations for patients with different forms of laminopathies based on significant phenome-genome parings. This dataset will be available on the Treatabolome website and, through interoperability, on genetic diagnosis and treatment support tools like the RD-Connect's Genome Phenome Analysis Platform.
编码核纤层蛋白 A/C 的 LMNA 基因突变可导致越来越多的疾病,这些疾病都符合罕见病的定义。LMNA 相关疾病的表型表达多样,已有超过 15 种综合征被描述,属于五个表型组:肌营养不良症、神经病变、心肌病、脂肪营养不良症和早老综合征。也有报道称存在重叠表型。将基因和变体与表型表达、疾病机制和相应治疗联系起来,在核纤层蛋白病中尤其具有挑战性。治疗建议有限,而且很少是基于变体的。
Treatabolome 计划旨在为 Solve-RD EU 项目中的罕见病提供现有的基于变体的特定治疗共享数据集。作为该项目的一部分,我们通过系统文献综述,采用科学数据生产的 FAIR(可发现、可访问、可互操作和可重用)准则,收集了核纤层蛋白病特定治疗的证据。
从 MEDLINE 和 Embase 书目数据库以及临床试验注册处(Cochrane 中心对照试验注册库、clinicaltrial.gov 和 EudraCT)系统地收集了针对 LMNA 相关疾病的治疗方法。两名调查员独立提取和分析文献数据。使用牛津循证医学中心 2011 年证据水平对纳入的论文进行评估。
通过系统方法从 4783 篇选定的文章中,我们确定了 78 篇符合纳入和排除标准定义的最终分析论文。这些论文包括 2 篇指南/共识文件、4 篇荟萃分析、14 项单臂试验、15 项病例系列、13 项队列研究、21 项病例报告、8 篇专家评论和 1 篇专家意见。根据显著的表型-基因组关联,治疗方法以电子方式进行了总结。根据不同核纤层蛋白病的表型表现,治疗方法的特异性各不相同。
我们根据显著的表型-基因组配对,为不同形式的核纤层蛋白病患者提取了 Treatabolome 值得推荐的治疗建议。该数据集将在 Treatabolome 网站上提供,并通过互操作性在遗传诊断和治疗支持工具(如 RD-Connect 的基因组表型分析平台)上提供。