Institute of Computational Chemistry and Catalysis, and Department of Chemistry, University of Girona, Girona, Spain.
Phys Chem Chem Phys. 2021 Apr 22;23(15):9524-9531. doi: 10.1039/d1cp00378j.
Cyclic GMP-AMP Synthase (cGAS) is activated upon DNA binding and catalyzes the synthesis of 2',3'-cGAMP from GTP and ATP. This cyclic dinucleotide is a messenger that triggers the autoimmune system of eukaryotic cells. In this study, we propose a Molecular Dynamics (MD) investigation of cGAS activation. We notably provide insights into the motion of the activation loop, both from a mechanical point of view and considering its role in the catalysis of cGAMP production. We finally shed light on the reaction resulting in cGAMP synthesis. Two possible catalytic routes (referred to as GTP-ATP and ATP-GTP) are proposed based on the active site occupancy, paving the way toward further exploration of the reaction mechanism.
环鸟苷酸-腺苷酸合酶 (cGAS) 在与 DNA 结合后被激活,并催化 GTP 和 ATP 合成 2',3'-cGAMP。这种环二核苷酸是触发真核细胞自身免疫系统的信使。在这项研究中,我们提出了对 cGAS 激活的分子动力学 (MD) 研究。我们特别从机械角度和考虑其在 cGAMP 产生中的催化作用两个方面,提供了对激活环运动的深入了解。最后,我们揭示了导致 cGAMP 合成的反应。基于活性位点占有率,提出了两种可能的催化途径(称为 GTP-ATP 和 ATP-GTP),为进一步探索反应机制铺平了道路。