School of Biological Sciences, The University of Auckland, New Zealand.
Manaaki Whenua-Landcare Research, Auckland, New Zealand.
Genome Biol Evol. 2021 May 7;13(5). doi: 10.1093/gbe/evab060.
Some animal groups, such as stick insects (Phasmatodea), have repeatedly evolved alternative reproductive strategies, including parthenogenesis. Genomic studies have found modification of the genes underlying meiosis exists in some of these animals. Here we examine the evolution of copy number, evolutionary rate, and gene expression in candidate meiotic genes of the New Zealand geographic parthenogenetic stick insect Clitarchus hookeri. We characterized 101 genes from a de novo transcriptome assembly from female and male gonads that have homology with meiotic genes from other arthropods. For each gene we determined copy number, the pattern of gene duplication relative to other arthropod orthologs, and the potential for meiosis-specific expression. There are five genes duplicated in C. hookeri, including one also duplicated in the stick insect Timema cristinae, that are not or are uncommonly duplicated in other arthropods. These included two sister chromatid cohesion associated genes (SA2 and SCC2), a recombination gene (HOP1), an RNA-silencing gene (AGO2) and a cell-cycle regulation gene (WEE1). Interestingly, WEE1 and SA2 are also duplicated in the cyclical parthenogenetic aphid Acyrthosiphon pisum and Daphnia duplex, respectively, indicating possible roles in the evolution of reproductive mode. Three of these genes (SA2, SCC2, and WEE1) have one copy displaying gonad-specific expression. All genes, with the exception of WEE1, have significantly different nonsynonymous/synonymous ratios between the gene duplicates, indicative of a shift in evolutionary constraints following duplication. These results suggest that stick insects may have evolved genes with novel functions in gamete production by gene duplication.
一些动物群体,如竹节虫(Phasmatodea),已经反复进化出替代生殖策略,包括孤雌生殖。基因组研究发现,一些此类动物中存在减数分裂相关基因的修饰。在这里,我们研究了新西兰地理上的孤雌生殖竹节虫 Clitarchus hookeri 中候选减数分裂基因的拷贝数、进化率和基因表达的演变。我们从雌性和雄性生殖腺的从头转录组组装中鉴定了 101 个与其他节肢动物减数分裂基因具有同源性的基因。对于每个基因,我们确定了其拷贝数、相对于其他节肢动物同源物的基因复制模式以及减数分裂特异性表达的潜力。在 C. hookeri 中有五个基因发生了复制,其中包括在竹节虫 Timema cristinae 中也复制的一个基因,而在其他节肢动物中并不或很少发生复制。这包括两个姐妹染色单体粘连相关基因(SA2 和 SCC2)、一个重组基因(HOP1)、一个 RNA 沉默基因(AGO2)和一个细胞周期调节基因(WEE1)。有趣的是,WEE1 和 SA2 也分别在周期性孤雌生殖蚜虫 Acyrthosiphon pisum 和 Daphnia duplex 中复制,表明它们可能在生殖模式的进化中起作用。这三个基因(SA2、SCC2 和 WEE1)中的一个拷贝具有性腺特异性表达。除了 WEE1 之外,所有基因的基因副本之间的非同义/同义比值都有显著差异,表明复制后进化约束发生了转变。这些结果表明,竹节虫可能通过基因复制进化出了在配子产生中具有新功能的基因。