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通过共振能量转移进行荧光距离测定。核糖体结合的转运RNA。

Fluorimetric distance determination by resonance energy transfer. Ribosome-bound transfer RNA.

作者信息

Friedrich K, Woolley P, Steinhäuser K G

机构信息

Max-Planck-Institut für molekulare Genetik, Berlin, Germany.

出版信息

Eur Biophys J. 1988;16(1):45-51. doi: 10.1007/BF00255325.

DOI:10.1007/BF00255325
PMID:3396517
Abstract

Using the technique of singlet-singlet (Förster-type) resonance energy transfer, we have determined five distances in the programmed ribosome, either with the P site or with both the A and the P sites occupied. Two of the distances are new and two agree with earlier measurements; the fifth showed disagreement in detail with earlier results of others, but a consistent general trend. The distances substantiate a current model for the location of ribosomally bound tRNA, except in regard of the position of the 3' end of P-site tRNA, which seems according to our results to lie too far away from the 3' terminus of the 16 S RNA to be accommodated in the model. We present new evidence for the hypothesis that anomalously charged tRNA does not bind to the cognately programmed A site in the same way as does tRNA charged with an amino acid. Occupation of the A site restricts mobility of the 3' end of tRNA in the P site.

摘要

利用单重态-单重态(福斯特型)共振能量转移技术,我们测定了处于编程状态的核糖体中的五个距离,这些核糖体要么P位点被占据,要么A位点和P位点都被占据。其中两个距离是新测定的,两个与早期测量结果一致;第五个距离在细节上与其他研究人员早期的结果不一致,但总体趋势是一致的。这些距离证实了目前关于核糖体结合tRNA位置的模型,除了P位点tRNA的3'端位置,根据我们的结果,它似乎离16S RNA的3'末端太远,无法纳入该模型。我们为以下假设提供了新的证据:异常带电的tRNA与携带氨基酸的tRNA不同,它不会以相同的方式结合到同源编程的A位点。A位点的占据限制了P位点tRNA 3'端的移动性。

相似文献

1
Fluorimetric distance determination by resonance energy transfer. Ribosome-bound transfer RNA.通过共振能量转移进行荧光距离测定。核糖体结合的转运RNA。
Eur Biophys J. 1988;16(1):45-51. doi: 10.1007/BF00255325.
2
Topological arrangement of two transfer RNAs on the ribosome. Fluorescence energy transfer measurements between A and P site-bound tRNAphe.核糖体上两个转运RNA的拓扑排列。A位点和P位点结合的苯丙氨酸转运RNA之间的荧光能量转移测量。
J Mol Biol. 1983 Jun 25;167(2):411-26. doi: 10.1016/s0022-2836(83)80342-8.
3
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Position of transfer ribonucleic acid on Escherichia coli ribosomes. Distance from the 3' end of 16S ribonucleic acid to three points on phenylalanine-accepting transfer ribonucleic acid in the donor site of 70S ribosomes.转运核糖核酸在大肠杆菌核糖体上的位置。70S核糖体供体位点上,从16S核糖核酸的3'端到苯丙氨酸接受转运核糖核酸上三个位点的距离。
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Covalent cross-linking of transfer ribonucleic acid to the ribosomal P site. Mechanism and site of reaction in transfer ribonucleic acid.转移核糖核酸与核糖体P位点的共价交联。转移核糖核酸中的反应机制和位点。
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Three tRNA binding sites on Escherichia coli ribosomes.大肠杆菌核糖体上的三个tRNA结合位点。
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70-S ribosomes of Escherichia coli have an additional site for deacylated tRNA binding.大肠杆菌的70-S核糖体有一个额外的脱酰基tRNA结合位点。
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Analysis of the puromycin reaction. The ribosomal exclusion principle for AcPhe-tRNA binding re-examined.嘌呤霉素反应分析。对用于乙酰苯丙氨酰 - tRNA结合的核糖体排除原理进行重新审视。
Eur J Biochem. 1986 Dec 15;161(3):715-21. doi: 10.1111/j.1432-1033.1986.tb10498.x.

本文引用的文献

1
Förster-type energy transfer. Simultaneous 'forward' and 'reverse' transfer between unlike fluorophores.Förster 型能量转移。不同荧光团之间同时发生的“正向”和“反向”转移。
Biophys Chem. 1987 May 9;26(2-3):367-74. doi: 10.1016/0301-4622(87)80036-4.
2
Theory of measurement of Förster-type energy transfer in macromolecules.大分子中 Förster 型能量转移的测量理论。
Proc Natl Acad Sci U S A. 1983 May;80(9):2579-83. doi: 10.1073/pnas.80.9.2579.
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Steps of mRNA translocation in protein biosynthesis.蛋白质生物合成中mRNA易位的步骤。
Nature. 1981 Oct 22;293(5834):675-7. doi: 10.1038/293675a0.
4
Structure of ribosomal protein L6 from Escherichia coli. A fluorescence study.大肠杆菌核糖体蛋白L6的结构。荧光研究。
Eur J Biochem. 1982 Oct;127(3):587-95. doi: 10.1111/j.1432-1033.1982.tb06913.x.
5
Distance measurement by energy transfer. Ribosomal proteins L6, L10 and L11 of Escherichia coli.
Eur J Biochem. 1983 Dec 1;137(1-2):337-45. doi: 10.1111/j.1432-1033.1983.tb07834.x.
6
Topological arrangement of two transfer RNAs on the ribosome. Fluorescence energy transfer measurements between A and P site-bound tRNAphe.核糖体上两个转运RNA的拓扑排列。A位点和P位点结合的苯丙氨酸转运RNA之间的荧光能量转移测量。
J Mol Biol. 1983 Jun 25;167(2):411-26. doi: 10.1016/s0022-2836(83)80342-8.
7
Distance measurement by energy transfer: the 3' end of 16-S RNA and proteins S4 and S17 of the ribosome of Escherichia coli.通过能量转移进行距离测量:大肠杆菌核糖体16 - S RNA的3'末端以及蛋白质S4和S17
Eur J Biochem. 1982 Dec;129(1):211-9. doi: 10.1111/j.1432-1033.1982.tb07042.x.
8
Distance moved by transfer RNA during translocation from the A site to the P site on the ribosome.转运RNA在核糖体上从A位点易位到P位点过程中移动的距离。
J Mol Biol. 1982 Mar 25;156(1):113-40. doi: 10.1016/0022-2836(82)90462-4.
9
Thin-layer chromatography of oligonucleotides: a device to aid the ultraviolet detection of fingerprint patterns.
Anal Biochem. 1982 Feb;120(1):189-92. doi: 10.1016/0003-2697(82)90335-9.
10
Position of transfer ribonucleic acid on Escherichia coli ribosomes. Distance from the 3' end of 16S ribonucleic acid to three points on phenylalanine-accepting transfer ribonucleic acid in the donor site of 70S ribosomes.转运核糖核酸在大肠杆菌核糖体上的位置。70S核糖体供体位点上,从16S核糖核酸的3'端到苯丙氨酸接受转运核糖核酸上三个位点的距离。
Biochemistry. 1981 Sep 1;20(18):5301-9. doi: 10.1021/bi00521a033.