嗜盐古菌地中海富盐菌在多重胁迫条件下Lsm蛋白的功能分析

Functional analysis of Lsm protein under multiple stress conditions in the extreme haloarchaeon Haloferax mediterranei.

作者信息

Payá Gloria, Bautista Vanesa, Camacho Mónica, Bonete María-José, Esclapez Julia

机构信息

Agrochemistry and Biochemistry Department, Biochemistry and Molecular Biology Area, Faculty of Science, University of Alicante, Ap 99, 03080, Alicante, Spain.

出版信息

Biochimie. 2021 Aug;187:33-47. doi: 10.1016/j.biochi.2021.05.002. Epub 2021 May 13.

Abstract

The Sm, like-Sm, and Hfq proteins belonging to the Sm superfamily of proteins are represented in all domains of life. These proteins are involved in several RNA metabolism pathways. The functions of bacterial Hfq and eukaryotic Sm proteins have been described, but knowledge about the in vivo functions of archaeal Sm proteins remains limited. This study aims to improve the understanding of Lsm proteins and their role using the haloarchaeon Haloferax mediterranei as a model microorganism. The Haloferax mediterranei genome contains one lsm gene that overlaps with the rpl37e gene. To determine the expression of lsm and rpl37e genes and the co-transcription of both, reverse transcription-polymerase chain reaction (RT-PCR) analyses were performed under different standard and stress conditions. The results suggest that the expression of lsm and rpl37e is constitutive. Co-transcription occurs at sub-optimal salt concentrations and temperatures, depending on the growth phase. The halophilic Lsm protein contains two Sm motifs, Sm1 and Sm2, and the sequence encoding the Sm2 motif also constitutes the promoter of the rpl37e gene. To investigate their biological functions, the lsm deletion mutant and the Sm1 motif deletion mutant, where the Sm2 motif remained intact, were generated and characterised. Comparison of the lsm deletion mutant, Sm1 deletion mutant, and the parental strain HM26 under standard and stress growth conditions revealed growth differences. Finally, swarming assays in complex and defined media showed greater swarming capacity in the deletion mutants.

摘要

属于Sm蛋白超家族的Sm、类Sm和Hfq蛋白存在于生命的所有领域。这些蛋白质参与多种RNA代谢途径。细菌Hfq和真核生物Sm蛋白的功能已被描述,但关于古菌Sm蛋白的体内功能的了解仍然有限。本研究旨在以嗜盐古菌地中海嗜盐栖热菌作为模式微生物,增进对Lsm蛋白及其作用的理解。地中海嗜盐栖热菌基因组包含一个与rpl37e基因重叠的lsm基因。为了确定lsm和rpl37e基因的表达以及两者的共转录情况,在不同的标准和应激条件下进行了逆转录-聚合酶链反应(RT-PCR)分析。结果表明,lsm和rpl37e的表达是组成型的。共转录在次优盐浓度和温度下发生,具体取决于生长阶段。嗜盐Lsm蛋白包含两个Sm基序,Sm1和Sm2,编码Sm2基序的序列也构成rpl37e基因的启动子。为了研究它们的生物学功能,构建并表征了lsm缺失突变体和Sm1基序缺失突变体(其中Sm2基序保持完整)。在标准和应激生长条件下对lsm缺失突变体、Sm1缺失突变体和亲本菌株HM26进行比较,发现了生长差异。最后,在复杂培养基和限定培养基中的群体游动试验表明,缺失突变体具有更强的群体游动能力。

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