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紫苏(L.)Lam.完整叶绿体基因组的特征分析

Characterization of the complete chloroplast genome of (L.) Lam.

作者信息

Li Pan, Lei Kang, Ji Lusha

机构信息

School of Pharmacy, Liaocheng University, Liaocheng City, Shandong Province, PR China.

出版信息

Mitochondrial DNA B Resour. 2021 May 13;6(5):1650-1651. doi: 10.1080/23802359.2021.1927220.

DOI:10.1080/23802359.2021.1927220
PMID:34027082
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8128171/
Abstract

(L.) Lam. belongs to family and mainly distributes in dry areas of bushes in tropical Africa, Asia, and Swaziland. Sometimes it can be used as fodder for goats, but it has been used as herbs in traditional medical treatment for 1000 years. In this study, we sequenced the sample of and determined its complete chloroplast genome. The length of CP genome is 158,434 bp, includes two invert repeats (IR) regions of 27,008 bp, a large single-copy (LSC) region of 86,132 bp, and a short single-copy (SSC) region of 18,286 bp. There are 133 genes, which includes 88 protein-coding genes, 8 rRNA and 37 tRNA, and 38.5% overall GC content. Each of K-UUU, 16, G-UCC, F, C1, L-UAA, V-UAC, B, D, 16, 2, B, I-GAU, A-UGC, and A genes contains a intron, P and 3 contains 2 intron. The phylogenetic analysis result shows that has the closest relationship with (MT990984) and (MN508801).

摘要

(L.)Lam. 属于[具体科名未给出]科,主要分布于热带非洲、亚洲和斯威士兰的干旱灌木丛地区。有时它可作为山羊的饲料,但在传统医学治疗中已被用作草药长达1000年。在本研究中,我们对[具体物种名未给出]的样本进行了测序,并确定了其完整的叶绿体基因组。叶绿体基因组长度为158,434 bp,包括两个27,008 bp的反向重复(IR)区域、一个86,132 bp的大单拷贝(LSC)区域和一个18,286 bp的小单拷贝(SSC)区域。有133个基因,包括88个蛋白质编码基因、8个rRNA和37个tRNA,总体GC含量为38.5%。K-UUU、16、G-UCC、F、C1、L-UAA、V-UAC、B、D、16、2、B、I-GAU、A-UGC和A基因中的每一个都含有一个内含子,P和3含有2个内含子。系统发育分析结果表明,[具体物种名未给出]与[具体物种名未给出](MT990984)和[具体物种名未给出](MN508801)关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4117/8128171/3980fa622f76/TMDN_A_1927220_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4117/8128171/3980fa622f76/TMDN_A_1927220_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4117/8128171/3980fa622f76/TMDN_A_1927220_F0001_B.jpg

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