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银莲花族(毛茛科)内物种的系统基因组分析及比较分析

Phylogenomic Analyses of Species and Comparative Analyses Within Tribe Anemoneae (Ranunculaceae).

作者信息

Park Kyu Tae, Park SeonJoo

机构信息

Department of Life Sciences, Yeungnam University, Gyeongsan, South Korea.

出版信息

Front Plant Sci. 2021 Jun 4;12:638580. doi: 10.3389/fpls.2021.638580. eCollection 2021.

Abstract

is a small genus of Ranunculaceae with medicinal and horticultural value. We characterized nine complete chloroplast (cp) genomes of , which ranged from 159,549 to 161,081 bp in length and had a typical quadripartite structure with a large single-copy region (LSC; 80,270-81,249 bp), a small single-copy region (SSC; 17,029-17,838 bp), and two copies of inverted repeat (IR; 31,008-31,100 bp). The cp genomes of possess 76 protein-coding genes (PCGs), 29 tRNAs, and four rRNA genes. Comparative analyses revealed a conserved ca. 5-kb IR expansion in and other Anemoneae; moreover, multiple inversion events occurred in and its relatives. Analyses of selection pressure (/) showed that most of the PCGs are highly conserved except for and in , , and Two genes ( and ) were identified as pseudogenes in . In contrast, gene was completely lost. The phylogenetic analyses based on 76 PCGs resolved the phylogeny of and its related genera. Non-monophyly of indicates that should be reclassified as an independent genus. In addition, var. is not closely related to

摘要

是毛茛科的一个小属,具有药用和园艺价值。我们对该属的9个完整叶绿体(cp)基因组进行了特征分析,其长度在159,549至161,081 bp之间,具有典型的四分体结构,包括一个大单拷贝区域(LSC;80,270 - 81,249 bp)、一个小单拷贝区域(SSC;17,029 - 17,838 bp)和两个反向重复序列拷贝(IR;31,008 - 31,100 bp)。该属的cp基因组拥有76个蛋白质编码基因(PCG)、29个tRNA和4个rRNA基因。比较分析揭示了该属和其他银莲花属植物中约5 kb的IR保守扩张;此外,该属及其近缘种发生了多次倒位事件。选择压力(/)分析表明,除了该属中的 和 外,大多数PCG高度保守。在该属中,两个基因( 和 )被鉴定为假基因。相比之下, 基因完全丢失。基于76个PCG的系统发育分析解析了该属及其相关属的系统发育关系。该属的非单系性表明应将其重新分类为一个独立的属。此外, 变种 与 关系不密切

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9456/8211876/a353e5952a60/fpls-12-638580-g001.jpg

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