University of Wisconsin Hospital and Clinics, Madison, Wisconsin.
College of Medicine Peoria, University of Illinois, Peoria, Illinois.
Pediatrics. 2021 Jul;148(1). doi: 10.1542/peds.2020-019000. Epub 2021 Jun 30.
Congenital anomalies affect 3% to 5% of births and remain the leading cause of infant death in the United States. As whole exome and genome sequencing are increasingly used to diagnose underlying genetic disease, the patient's clinical presentation remains the most important context for interpreting sequencing results, including frequently reported variants of uncertain significance (VUS). Classification of a variant as VUS acknowledges limits on evidence to establish whether a variant can be classified as pathogenic or benign according to the American College of Medical Genetics guidelines. Importantly, the VUS designation reflects limits on the breadth of evidence linking the genetic variant to a disease. However, available evidence, although limited, may be surprisingly relevant in an individual patient's case. Accordingly, a VUS result should be approached neither as nondiagnostic genetic result nor as automatically "uncertain" in its potential to guide clinical decision-making. In this article, we discuss a case of an infant born at 29 weeks 4 days without a corpus callosum, whose whole genome sequencing yielded compound heterozygous variants both classified as VUS in , a gene encoding for a receptor involved in a canonical signaling mechanism that guides axons across midline. Approaching the VUS result as potentially pathogenic, we found the infant ultimately had pituitary dysfunction and renal anomalies consistent with other reported variants and basic science literature. Accordingly, we highlight resources for variant interpretation available to clinicians to evaluate VUS results, particularly as they inform the diagnosis of individually rare but collectively common rare diseases.
先天性异常影响美国 3%至 5%的出生人数,仍是导致婴儿死亡的主要原因。由于全外显子组和全基因组测序越来越多地用于诊断潜在的遗传疾病,患者的临床表现仍然是解释测序结果的最重要背景,包括经常报告的意义未明的变异(VUS)。将变异归类为 VUS 承认,根据美国医学遗传学学院的指南,根据证据确定变异是否可归类为致病性或良性存在局限性。重要的是,VUS 诊断反映了将遗传变异与疾病联系起来的证据广度存在局限性。然而,尽管有限,在个别患者的情况下,可用的证据可能会令人惊讶地相关。因此,VUS 结果既不应视为无诊断意义的遗传结果,也不应因其在指导临床决策方面的潜在不确定性而被视为“不确定”。在本文中,我们讨论了一个 29 周 4 天出生的婴儿的病例,该婴儿没有胼胝体,其全基因组测序结果显示,编码一种参与经典信号通路的受体的基因存在两种杂合变异,均被归类为 VUS。我们将 VUS 结果视为潜在的致病性,发现该婴儿最终患有垂体功能障碍和肾脏异常,与其他报道的 变异和基础科学文献一致。因此,我们强调了可供临床医生用于评估 VUS 结果的变异解释资源,特别是因为它们可以诊断个体罕见但总体常见的罕见疾病。