Galicia-Andrés Edgar, Tunega Daniel, Gerzabek Martin H, Oostenbrink Chris
Institute of Molecular Modeling and Simulation University of Natural Resources and Life Sciences Vienna Austria.
Institute of Soil Research University of Natural Resources and Life Sciences Vienna Austria.
Eur J Soil Sci. 2021 May;72(3):1231-1242. doi: 10.1111/ejss.12971. Epub 2020 May 6.
Glyphosate is an important and widely used herbicide, its environmental behaviour being of scientific and public interest. Computational models of clay minerals and their interactions with small organic molecules are valuable in studying adsorption processes at an atomistic resolution. We analysed the adsorption process of glyphosate on kaolinite, a clay mineral with a high abundance in several types of soils (e.g., of subtropical or tropical origin), in terms of the adsorption strength. The molecular interactions are characterized by monitoring the occurrence of hydrogen bonds, the orientation of the molecular dipole relative to the interface and the interaction energy. Two different ionic forms of glyphosate were considered: neutral and anionic (-1). It was shown that the main mechanism of the binding of both glyphosate forms to the aluminol surface of kaolinite is through multiple hydrogen bonds. The standard free energy of adsorption of neutral glyphosate from water solution to the basal octahedral surface of kaolinite was computed at -5 kJ mol, whereas for the anionic form this quantity amounted to -14 kJ mol. Our finding showed that kaolinite has an important contribution to overall adsorption capacity of soils for glyphosate, specifically in its anionic form.
The adsorption free energy of glyphosate on a kaolinite surface is quantifiedInteractions are computed by quantum mechanics and by classical force fieldMolecular interactions are characterized in terms of hydrogen bonds and orientationsThe effect of polarization of the medium on the calculations is analysed.
草甘膦是一种重要且广泛使用的除草剂,其环境行为具有科学和公众关注度。粘土矿物及其与小有机分子相互作用的计算模型对于在原子分辨率下研究吸附过程具有重要价值。我们从吸附强度方面分析了草甘膦在高岭土上的吸附过程,高岭土是一种在多种类型土壤(如亚热带或热带起源的土壤)中含量很高的粘土矿物。通过监测氢键的出现、分子偶极相对于界面的取向以及相互作用能来表征分子间相互作用。考虑了草甘膦的两种不同离子形式:中性和阴离子形式(-1)。结果表明,两种草甘膦形式与高岭土铝醇表面结合的主要机制是通过多个氢键。计算得出中性草甘膦从水溶液吸附到高岭土基面八面体表面的标准自由能为-5 kJ·mol,而阴离子形式的这一数值为-14 kJ·mol。我们的研究结果表明,高岭土对土壤对草甘膦的总体吸附能力有重要贡献,特别是对于其阴离子形式。
量化了草甘膦在高岭土表面的吸附自由能通过量子力学和经典力场计算相互作用从氢键和取向方面表征分子间相互作用分析了介质极化对计算的影响。