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利用长读测序技术鉴定全长环状核酸。

Identification of full-length circular nucleic acids using long-read sequencing technologies.

机构信息

State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu, 210096, China.

Key Laboratory of Environmental Medicine Engineering, Ministry of Education, School of Public Health, Southeast University, Nanjing, Jiangsu, 210096, China.

出版信息

Analyst. 2021 Oct 11;146(20):6102-6113. doi: 10.1039/d1an01147b.

Abstract

Unlike the traditional perception in genomic DNA or linear RNA, circular nucleic acids are a class of functional biomolecules with a circular configuration and are often observed in nature. These circular molecules encompass the full spectrum of size and play an important role in organisms, making circular nucleic acids research worthy. Due to the low abundance of most types of circular nucleic acids and the disadvantages of short-read sequencing platforms, accurate and full-length circular nucleic acid sequencing and identification is difficult. In this review, we have provided insights into full-length circular nucleic acid detection methods using long-read sequencing technologies, with a focus on the experimental and bioinformatics strategies to obtain accurate sequences.

摘要

与传统的基因组 DNA 或线性 RNA 观念不同,环状核酸是一类具有环状结构的功能生物分子,在自然界中广泛存在。这些环状分子大小不一,在生物体中发挥着重要作用,因此环状核酸的研究具有重要意义。由于大多数类型的环状核酸丰度较低,并且短读测序平台存在缺陷,因此准确和全长的环状核酸测序和鉴定具有一定难度。在本文中,我们深入探讨了利用长读测序技术进行全长环状核酸检测的方法,重点介绍了获取准确序列的实验和生物信息学策略。

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