William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas 77204, United States.
Department of Chemistry, University of Houston, Houston, Texas 77204, United States.
J Phys Chem B. 2021 Oct 14;125(40):11264-11274. doi: 10.1021/acs.jpcb.1c06589. Epub 2021 Oct 5.
Hematin crystallization, which is an essential component of the physiology of malaria parasites and the most successful target for antimalarial drugs, proceeds in mixed organic-aqueous solvents both and . Here we employ molecular dynamics simulations to examine the structuring and dynamics of a water-normal octanol mixture (a solvent that mimics the environment hosting hematin crystallization ) in the vicinity of the typical faces in the habit of a hematin crystal. The simulations reveal that the properties of the solvent in the layer adjacent to the crystal are strongly impacted by the distinct chemical and topological features presented by each crystal face. The solvent organizes into at least three distinct layers. We also show that structuring of the solvent near the different faces of β-hematin strongly impacts the interfacial dynamics. The relaxation time of -octanol molecules is longest in the contact layers and correlates with the degree of structural ordering at the respective face. We show that the macroscopically homogeneous water-octanol solution holds clusters of water and -octanol connected by hydrogen bonds that entrap the majority of the water but are mostly smaller than 30 water molecules. Near the crystal surface the clusters anchor on hematin carboxyl groups. These results provide a direct example that solvent structuring is not restricted to aqueous and other hydrogen-bonded solutions. Our findings illuminate two fundamental features of the mechanisms of hematin crystallization: the elongated shapes of natural and synthetic hematin crystals and the stabilization of charged groups of hematin and antimalarials by encasing in water clusters. In addition, these findings suggest that hematin crystallization may be controlled by additives that disrupt or reinforce solvent structuring.
血红素结晶是疟原虫生理学的一个重要组成部分,也是抗疟药物最成功的靶点,它在混合有机-水溶剂中进行,这里我们利用分子动力学模拟来研究水-正辛醇混合物(一种模拟血红素结晶环境的溶剂)在典型血红素晶体形态面附近的结构和动力学。模拟结果表明,晶体表面的化学和拓扑特征强烈影响着紧邻晶体层中溶剂的性质。溶剂在至少三个不同的层中组织。我们还表明,β-血红素不同表面附近溶剂的结构强烈影响界面动力学。-辛醇分子的弛豫时间在接触层中最长,与相应表面的结构有序程度相关。我们表明,宏观均匀的水-辛醇溶液中存在由氢键连接的水分子和 -辛醇簇,这些簇困住了大部分水,但大多数簇小于 30 个水分子。在晶体表面附近,簇锚定在血红素羧基上。这些结果提供了一个直接的例子,证明溶剂结构不仅限于水和其他氢键溶液。我们的发现阐明了血红素结晶机制的两个基本特征:天然和合成血红素晶体的拉长形状以及通过将水簇包裹在血红素和抗疟药物中来稳定血红素和抗疟药物的带电基团。此外,这些发现表明血红素结晶可能受到破坏或增强溶剂结构的添加剂的控制。