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小鼠心肌细胞中调控基因表达与可变剪接的关系及心肌肥大

Relationship between -regulated gene expression and alternative splicing in mouse cardiomyocytes and cardiac hypertrophy.

作者信息

Li Shuai, Yang Ping

机构信息

Jilin Provincial Precision Medicine Key Laboratory for Cardiovascular Genetic Diagnosis, Department of Cardiology, China-Japan Union Hospital of Jilin University, Changchun, China.

出版信息

J Thorac Dis. 2021 Sep;13(9):5517-5533. doi: 10.21037/jtd-21-1222.

Abstract

BACKGROUND

Cardiac hypertrophy may be classified as either physiological or pathological. Pathological hypertrophy has a complex etiology and is genetically regulated. In this study, we used a mouse model of cardiac hypertrophy to explore the mechanisms of gene regulation, in particular, modulation of the expression of target genes through transcription factor activity, regulation of immune and inflammation-associated genes and regulation of the alternative splicing of transcription factors.

METHODS

Mouse models of pathological cardiac hypertrophy were established by transverse aortic constriction (TAC). We overexpressed HSPA1A in mouse cardiac HL-1 cells. GO and KEGG pathway annotation database was used to analyze all DEGs.

RESULTS

The expression of differed significantly between TAC + dantrolene sham + dantrolene (Sham was the non-TAC group, and DMSO was the contrast agent), and TAC + DMSO sham + DMSO. The RNA-binding protein Zfp36 was found to be differentially expressed between both TAC + dantrolene sham + dantrolene and TAC + DMSO sham + DMSO. The expression of and was significantly different between TAC + dantrolene and TAC + DMSO. was found to selectively regulate the expression of non-coding RNAs related to cardiac hypertrophy, including Rn7sk and RMRP. The downregulated genes were mainly related to inflammation and the immune response. HSPA1A negatively regulated alternative splicing of and positively regulated alternative splicing of .

CONCLUSIONS

was closely related to cardiac hypertrophy. Zfp36 was also related to cardiac hypertrophy. Dantrolene may delay cardiac hypertrophy and ventricular remodeling by regulating the expression of the RNA-binding protein genes and . positively regulated the expression of the non-coding RNAs RN7SK and RMRP while negatively regulating the expression of inflammation- and immune response-related genes. can play a role in cardiac hypertrophy by regulating the alternative splicing of and .

摘要

背景

心脏肥大可分为生理性或病理性。病理性肥大病因复杂且受基因调控。在本研究中,我们使用心脏肥大小鼠模型来探究基因调控机制,特别是通过转录因子活性对靶基因表达的调节、免疫和炎症相关基因的调控以及转录因子可变剪接的调控。

方法

通过横向主动脉缩窄(TAC)建立病理性心脏肥大小鼠模型。我们在小鼠心脏HL-1细胞中过表达HSPA1A。使用GO和KEGG通路注释数据库分析所有差异表达基因(DEGs)。

结果

TAC + 丹曲林组与假手术 + 丹曲林组(假手术组为非TAC组,二甲基亚砜为对照剂)以及TAC + 二甲基亚砜组与假手术 + 二甲基亚砜组之间的表达差异显著。发现RNA结合蛋白Zfp36在TAC + 丹曲林组与假手术 + 丹曲林组以及TAC + 二甲基亚砜组与假手术 + 二甲基亚砜组之间存在差异表达。TAC + 丹曲林组与TAC + 二甲基亚砜组之间的表达差异显著。发现其选择性调节与心脏肥大相关的非编码RNA的表达,包括Rn7sk和RMRP。下调的基因主要与炎症和免疫反应相关。HSPA1A负向调节的可变剪接并正向调节的可变剪接。

结论

与心脏肥大密切相关。Zfp36也与心脏肥大相关。丹曲林可能通过调节RNA结合蛋白基因和的表达来延缓心脏肥大和心室重构。正向调节非编码RNA RN7SK和RMRP的表达,同时负向调节与炎症和免疫反应相关基因的表达。可通过调节的可变剪接在心脏肥大中发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c4c/8482330/112b0d63ab0b/jtd-13-09-5517-f1.jpg

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