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验证红藻门石花菜属韩国群体的遗传多样性热点表明遗传多样性较低,地理分布相似。

Verification of hotspots of genetic diversity in Korean population of Grateloupia asiatica and G. jejuensis (Rhodophyta) show low genetic diversity and similar geographic distribution.

机构信息

Department of Biology and Research Institute for Basic Sciences, Jeju National University, Jeju, 63243, Korea.

Korea Inter-University Institute of Ocean Science, Pukyong National University, Busan, 48513, Korea.

出版信息

Genes Genomics. 2021 Dec;43(12):1463-1469. doi: 10.1007/s13258-021-01168-y. Epub 2021 Oct 25.

Abstract

BACKGROUND

Understanding the genetic diversity and distribution patterns of seaweeds species is crucial for evaluating key regions of high genetic diversity. Identifying hotspots of high intraspecific diversity is an important step for developing conservation strategies. Grateloupia is a diverse genus of Rhodophyta, many of which are resource of numerous useful bioactive compounds; therefore, the genus is valuable target for conservation.

OBJECTIVE

The aim of this study is to examine the genetic diversity and population structure of two Grateloupia species, Grateloupia asiatica and Grateloupia jejuensis, with the understanding of the phylogeography of the Korean genetic diversity hotspot for two species.

METHODS

Plastid rbcL gene sequences of 134 specimens of G. asiatica and 112 specimens of G. jejuensis collected from the Korean coast were analyzed. We evaluated the number of haplotypes, genetic diversity (haplotype and nucleotide diversity), and haplotype networks of two species. Historical demographic was inferred by calculating neutrality tests and genetic differentiation was estimated using the fixation index, F.

RESULTS

Our results show that both species are generally similar in geographical distribution patterns, that is, relatively homogeneous with few haplotypes derived from the most frequent haplotype. The east coast of Korea is identified as a 'hotspot' with the highest genetic diversity for both species, whereas Jeju Island is identified as a 'cold spot' with the lowest genetic diversity for G. jejuensis. Analyses across most distribution ranges of the two species in Korea reveal low genetic and haplotype diversities, which could indicate that these two Grateloupia species have either experienced a historical lack of diversity or a recent reduction in diversity due to high gene flow.

CONCLUSIONS

The low genetic diversity values found in the present study raise considerable concern about the conservation status of these two Grateloupia species and highlight the need to locate further hotspots of genetic diversity to strengthen their resilience against further decline.

摘要

背景

了解海藻物种的遗传多样性和分布模式对于评估具有高遗传多样性的关键区域至关重要。确定种内高度多样性的热点是制定保护策略的重要步骤。Grateloupia 是红藻门的一个多样化属,其中许多种是许多有用生物活性化合物的资源;因此,该属是保护的有价值目标。

目的

本研究旨在检查两种 Grateloupia 物种,即亚洲石莼和济州石莼的遗传多样性和种群结构,以了解这两个物种韩国遗传多样性热点的系统地理学。

方法

分析了从韩国海岸采集的 134 个亚洲石莼和 112 个济州石莼标本的质体 rbcL 基因序列。我们评估了两个物种的单倍型数量、遗传多样性(单倍型和核苷酸多样性)和单倍型网络。通过计算中性检验推断历史人口动态,并用固定指数 F 估计遗传分化。

结果

我们的结果表明,这两个物种在地理分布模式上总体相似,即相对均匀,只有少数来自最常见单倍型的单倍型。韩国东海岸被确定为两个物种的“热点”,具有最高的遗传多样性,而济州岛则被确定为 G. jejuensis 的“冷点”,具有最低的遗传多样性。对韩国两个物种的大多数分布范围进行分析表明,遗传多样性和单倍型多样性较低,这可能表明这两个 Grateloupia 物种要么经历了历史上的多样性缺乏,要么由于基因流较高而导致了近期的多样性减少。

结论

本研究中发现的低遗传多样性值引起了对这两个 Grateloupia 物种保护状况的相当关注,并强调需要找到更多的遗传多样性热点,以增强它们对进一步下降的抵御能力。

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