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通过综合生物信息学分析,细胞周期蛋白依赖性激酶 4有望成为治疗肝细胞癌转移的靶点。

Cyclin-Dependent Kinase 4 is expected to be a therapeutic target for hepatocellular carcinoma metastasis using integrated bioinformatic analysis.

机构信息

The Third Department of Hepatic Surgery, Eastern Hepatobiliary Surgery Hospital, Second Military Medical University, Shanghai, China.

Changzheng Hospital, Second Military Medical University, Shanghai, China.

出版信息

Bioengineered. 2021 Dec;12(2):11728-11739. doi: 10.1080/21655979.2021.2006942.

Abstract

Hepatocellular carcinoma (HCC) is the third leading cause of cancer-related mortality worldwide. HCC cells possess biological characteristics of high invasion and metastasis. In this respect, to prevent cancer cell invasion and metastasis and early active intervention, we herein screened through the TCGA database for further prognostic analysis including overall survival and disease-free survival . The Kaplan-Meier curve suggested that Cyclin-Dependent Kinase 4 (CDK4) might be an independent prognostic factor for HCC. Moreover, we performed mRNA expression analysis to measure CDK4 levels in normal liver tissues and HCC tissues, and immunohistochemistry analysis to detect protein level of CDK4 in Non-tumor tissue and HCC tissues . Our findings indicated that the expression of CDK4 was significantly higher in tumor tissues compared with Non-tumor tissue in HCC, which increased from HCC stage 1 to 3. Furthermore, the results of transwell-assay indicated that knocking down CDK4 significantly suppresses the invasion and migration of HCC cells, and the results of bioinformatics analysis revealed that genes closely associated with CDK4 are potentially worthy of further investigation. Additionally, the results of Western Blot indicated CDK4 regulates epithelial mesenchymal transition in HCC,and CDK4 appears to regulate EMT and HCC progression via the Wnt/β-catenin pathway. Collectively, this study found the key target gene through bioinformatic analysis and further functional validation through cell experiments. In particular, CDK4 is anticipated to become a crucial hub gene to snipe the metastasis of cancer cells in HCC.: Hepatocellular carcinoma (HCC);Cyclin-Dependent Kinase 4(CDK4);Genomic Data Commons (GDC); genes; EC, Endometrial cancer; GEO, gene expression omnibus; GO, Gene Ontology; GSEA, Gene set enrichment analysis; KEGG, Database; TCGA, The Cancer Genome Atlas; TSGs, tumor suppressor genes;epithelial mesenchymal transition (EMT).

摘要

肝细胞癌(HCC)是全球癌症相关死亡的第三大原因。HCC 细胞具有高侵袭和转移的生物学特性。在这方面,为了防止癌细胞的侵袭和转移,以及早期的积极干预,我们通过 TCGA 数据库进行了筛选,以便进行进一步的预后分析,包括总生存期和无病生存期。Kaplan-Meier 曲线表明,细胞周期蛋白依赖性激酶 4(CDK4)可能是 HCC 的一个独立预后因素。此外,我们进行了 mRNA 表达分析,以测量正常肝组织和 HCC 组织中的 CDK4 水平,并进行了免疫组化分析,以检测非肿瘤组织和 HCC 组织中 CDK4 的蛋白水平。我们的研究结果表明,与正常肝组织相比,HCC 组织中 CDK4 的表达明显更高,从 HCC 1 期到 3 期逐渐升高。此外,Transwell 实验结果表明,敲低 CDK4 显著抑制 HCC 细胞的侵袭和迁移,生物信息学分析的结果表明,与 CDK4 密切相关的基因可能值得进一步研究。此外,Western Blot 实验结果表明,CDK4 调节 HCC 中的上皮间质转化,并且 CDK4 似乎通过 Wnt/β-catenin 通路调节 EMT 和 HCC 进展。总之,本研究通过生物信息学分析找到了关键的靶基因,并通过细胞实验进行了进一步的功能验证。特别是,CDK4 有望成为 HCC 中癌细胞转移的关键枢纽基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c9d/8810199/460242fa55f9/KBIE_A_2006942_F0001_OC.jpg

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