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DNPSOUP:动态核极化模拟软件包。

DNPSOUP: A simulation software package for dynamic nuclear polarization.

机构信息

Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, United States; Aspen Technology, Inc., 20 Crosby Drive, Bedford, MA 01730, United States.

Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, United States; Laboratoire des Biomolécules, LBM, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.

出版信息

J Magn Reson. 2022 Jan;334:107107. doi: 10.1016/j.jmr.2021.107107. Epub 2021 Nov 9.

Abstract

Dynamic Nuclear Polarization Simulation Optimized with a Unified Propagator (DNPSOUP) is an open-source numerical software program that models spin dynamics for dynamic nuclear polarization (DNP). The software package utilizes a direct numerical approach using the inhomogeneous master equation to treat the time evolution of the spin density operator under coherent Hamiltonians and stochastic relaxation effects. Here we present the details of the theory behind the software, starting from the master equation, and arriving at characteristic operators for any section of density operator time-evolution. We then provide an overview of the DNPSOUP software architecture. The efficacy of the program is demonstrated by simulating DNP field profiles on small spin systems exploiting both continuous wave and time-domain DNP mechanisms. Examples include Zeeman field profiles for the solid effect, Overhauser effect, and cross effect, and microwave field profiles for NOVEL, off-resonance NOVEL, the integrated solid effect, the stretched solid effect, and TOP-DNP. The software should facilitate a better understanding of the DNP process, aid in the design of optimized DNP polarizing agents, and allow us to examine new pulsed DNP methods at conditions that are not currently experimentally accessible, especially at high magnetic fields with high-power microwave pulses.

摘要

动态核极化模拟优化的统一传播子(DNPSOUP)是一个开源数值软件程序,用于对动态核极化(DNP)的自旋动力学进行建模。该软件包采用了直接数值方法,使用非均匀主方程来处理在相干哈密顿量和随机弛豫效应下自旋密度算子的时间演化。在这里,我们从主方程出发,介绍了该软件背后的理论细节,并得出了任何密度算子时间演化部分的特征算子。然后,我们概述了 DNPSOUP 软件架构。该程序的功效通过模拟小型自旋系统上的 DNP 场分布来展示,利用连续波和时域 DNP 机制。示例包括固体效应、Overhauser 效应和交叉效应的磁场分布,以及 NOVEL、非共振 NOVEL、集成固体效应、拉伸固体效应和 TOP-DNP 的微波场分布。该软件应该有助于更好地理解 DNP 过程,辅助优化 DNP 极化剂的设计,并使我们能够在目前实验上无法达到的条件下,特别是在高磁场和高功率微波脉冲下,检验新的脉冲 DNP 方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3046/8819672/d05eba223886/nihms-1772031-f0001.jpg

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