Suppr超能文献

DNPSOUP:动态核极化模拟软件包。

DNPSOUP: A simulation software package for dynamic nuclear polarization.

机构信息

Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, United States; Aspen Technology, Inc., 20 Crosby Drive, Bedford, MA 01730, United States.

Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, United States; Laboratoire des Biomolécules, LBM, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.

出版信息

J Magn Reson. 2022 Jan;334:107107. doi: 10.1016/j.jmr.2021.107107. Epub 2021 Nov 9.

Abstract

Dynamic Nuclear Polarization Simulation Optimized with a Unified Propagator (DNPSOUP) is an open-source numerical software program that models spin dynamics for dynamic nuclear polarization (DNP). The software package utilizes a direct numerical approach using the inhomogeneous master equation to treat the time evolution of the spin density operator under coherent Hamiltonians and stochastic relaxation effects. Here we present the details of the theory behind the software, starting from the master equation, and arriving at characteristic operators for any section of density operator time-evolution. We then provide an overview of the DNPSOUP software architecture. The efficacy of the program is demonstrated by simulating DNP field profiles on small spin systems exploiting both continuous wave and time-domain DNP mechanisms. Examples include Zeeman field profiles for the solid effect, Overhauser effect, and cross effect, and microwave field profiles for NOVEL, off-resonance NOVEL, the integrated solid effect, the stretched solid effect, and TOP-DNP. The software should facilitate a better understanding of the DNP process, aid in the design of optimized DNP polarizing agents, and allow us to examine new pulsed DNP methods at conditions that are not currently experimentally accessible, especially at high magnetic fields with high-power microwave pulses.

摘要

动态核极化模拟优化的统一传播子(DNPSOUP)是一个开源数值软件程序,用于对动态核极化(DNP)的自旋动力学进行建模。该软件包采用了直接数值方法,使用非均匀主方程来处理在相干哈密顿量和随机弛豫效应下自旋密度算子的时间演化。在这里,我们从主方程出发,介绍了该软件背后的理论细节,并得出了任何密度算子时间演化部分的特征算子。然后,我们概述了 DNPSOUP 软件架构。该程序的功效通过模拟小型自旋系统上的 DNP 场分布来展示,利用连续波和时域 DNP 机制。示例包括固体效应、Overhauser 效应和交叉效应的磁场分布,以及 NOVEL、非共振 NOVEL、集成固体效应、拉伸固体效应和 TOP-DNP 的微波场分布。该软件应该有助于更好地理解 DNP 过程,辅助优化 DNP 极化剂的设计,并使我们能够在目前实验上无法达到的条件下,特别是在高磁场和高功率微波脉冲下,检验新的脉冲 DNP 方法。

相似文献

1
DNPSOUP: A simulation software package for dynamic nuclear polarization.
J Magn Reson. 2022 Jan;334:107107. doi: 10.1016/j.jmr.2021.107107. Epub 2021 Nov 9.
3
Frequency swept microwaves for hyperfine decoupling and time domain dynamic nuclear polarization.
Solid State Nucl Magn Reson. 2015 Nov;72:79-89. doi: 10.1016/j.ssnmr.2015.10.001. Epub 2015 Oct 9.
4
Frequency-Swept Integrated Solid Effect.
Angew Chem Int Ed Engl. 2017 Jun 6;56(24):6744-6748. doi: 10.1002/anie.201700032. Epub 2017 May 12.
5
Verdazyl-ribose: A new radical for solid-state dynamic nuclear polarization at high magnetic field.
J Magn Reson. 2018 Apr;289:122-131. doi: 10.1016/j.jmr.2018.02.016. Epub 2018 Mar 1.
6
Role of electron spin dynamics and coupling network in designing dynamic nuclear polarization.
Prog Nucl Magn Reson Spectrosc. 2021 Oct-Dec;126-127:1-16. doi: 10.1016/j.pnmrs.2021.05.003. Epub 2021 Jun 1.
7
Theoretical aspects of Dynamic Nuclear Polarization in the solid state - the cross effect.
J Magn Reson. 2012 Jan;214(1):29-41. doi: 10.1016/j.jmr.2011.09.047. Epub 2011 Oct 5.
8
Theoretical aspects of Magic Angle Spinning - Dynamic Nuclear Polarization.
J Magn Reson. 2015 Sep;258:102-20. doi: 10.1016/j.jmr.2015.07.001. Epub 2015 Jul 13.
9
Frequency-chirped dynamic nuclear polarization with magic angle spinning using a frequency-agile gyrotron.
J Magn Reson. 2019 Nov;308:106586. doi: 10.1016/j.jmr.2019.106586. Epub 2019 Aug 29.

引用本文的文献

1
Non-perturbative treatment of the solid effect of dynamic nuclear polarization.
Magn Reson (Gott). 2023 Jun 5;4(1):129-152. doi: 10.5194/mr-4-129-2023. eCollection 2023.
2
Time domain DNP at 1.2 T.
J Magn Reson. 2021 Aug;329:107012. doi: 10.1016/j.jmr.2021.107012. Epub 2021 Jun 7.

本文引用的文献

1
Time domain DNP at 1.2 T.
J Magn Reson. 2021 Aug;329:107012. doi: 10.1016/j.jmr.2021.107012. Epub 2021 Jun 7.
3
Markovian exchange phenomena in magnetic resonance and the Lindblad equation.
J Magn Reson. 2021 Jan;322:106868. doi: 10.1016/j.jmr.2020.106868. Epub 2020 Nov 6.
4
Array programming with NumPy.
Nature. 2020 Sep;585(7825):357-362. doi: 10.1038/s41586-020-2649-2. Epub 2020 Sep 16.
5
Full-Scale Ab Initio Simulation of Magic-Angle-Spinning Dynamic Nuclear Polarization.
J Phys Chem Lett. 2020 Jul 16;11(14):5655-5660. doi: 10.1021/acs.jpclett.0c00955. Epub 2020 Jul 2.
6
Adiabatic Solid Effect.
J Phys Chem Lett. 2020 May 7;11(9):3416-3421. doi: 10.1021/acs.jpclett.0c00654. Epub 2020 Apr 20.
7
A master equation for spin systems far from equilibrium.
J Magn Reson. 2020 Jan;310:106645. doi: 10.1016/j.jmr.2019.106645. Epub 2019 Nov 19.
8
Three-spin solid effect and the spin diffusion barrier in amorphous solids.
Sci Adv. 2019 Jul 26;5(7):eaax2743. doi: 10.1126/sciadv.aax2743. eCollection 2019 Jul.
9
Quantum mechanical MRI simulations: Solving the matrix dimension problem.
Sci Adv. 2019 Jul 19;5(7):eaaw8962. doi: 10.1126/sciadv.aaw8962. eCollection 2019 Jul.
10
Defeating the Matrix.
J Magn Reson. 2019 Sep;306:75-79. doi: 10.1016/j.jmr.2019.07.031. Epub 2019 Jul 9.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验