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临床基因组资源(ClinGen)家族性高胆固醇血症变异体管理专家小组共识指南,用于 LDLR 变异体分类。

The Clinical Genome Resource (ClinGen) Familial Hypercholesterolemia Variant Curation Expert Panel consensus guidelines for LDLR variant classification.

机构信息

Department of Health Promotion and Prevention of Noncommunicable Diseases, Nacional Institute of Health Dr. Ricardo Jorge, Lisbon, Portugal; BioISI - BioSystems & Integrative Sciences Institute, Department of Chemistry and Biochemistry, Faculty of Sciences, University of Lisbon, Lisbon, Portugal.

Departments of Biomedical Data Science and Pathology, School of Medicine, Stanford University, Stanford, CA; Department of Paediatric Laboratory Medicine, The Hospital for Sick Children, Toronto Ontario, Canada.

出版信息

Genet Med. 2022 Feb;24(2):293-306. doi: 10.1016/j.gim.2021.09.012. Epub 2021 Nov 30.


DOI:10.1016/j.gim.2021.09.012
PMID:34906454
Abstract

PURPOSE: In 2015, the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) published consensus standardized guidelines for sequence-level variant classification in Mendelian disorders. To increase accuracy and consistency, the Clinical Genome Resource Familial Hypercholesterolemia (FH) Variant Curation Expert Panel was tasked with optimizing the existing ACMG/AMP framework for disease-specific classification in FH. In this study, we provide consensus recommendations for the most common FH-associated gene, LDLR, where >2300 unique FH-associated variants have been identified. METHODS: The multidisciplinary FH Variant Curation Expert Panel met in person and through frequent emails and conference calls to develop LDLR-specific modifications of ACMG/AMP guidelines. Through iteration, pilot testing, debate, and commentary, consensus among experts was reached. RESULTS: The consensus LDLR variant modifications to existing ACMG/AMP guidelines include (1) alteration of population frequency thresholds, (2) delineation of loss-of-function variant types, (3) functional study criteria specifications, (4) cosegregation criteria specifications, and (5) specific use and thresholds for in silico prediction tools, among others. CONCLUSION: Establishment of these guidelines as the new standard in the clinical laboratory setting will result in a more evidence-based, harmonized method for LDLR variant classification worldwide, thereby improving the care of patients with FH.

摘要

目的:2015 年,美国医学遗传学与基因组学学院(ACMG)和分子病理学协会(AMP)发布了孟德尔疾病序列水平变异分类的共识标准化指南。为了提高准确性和一致性,临床基因组资源家族性高胆固醇血症(FH)变异校正专家小组被委托优化现有的 ACMG/AMP 框架,以进行 FH 疾病特异性分类。在这项研究中,我们针对最常见的 FH 相关基因 LDLR 提供了共识建议,其中已鉴定出超过 2300 种独特的 FH 相关变体。

方法:多学科 FH 变异校正专家小组通过面对面会议、频繁的电子邮件和电话会议,制定了 LDLR 特异性的 ACMG/AMP 指南修改方案。通过反复迭代、试点测试、辩论和评论,专家们达成了共识。

结果:对现有 ACMG/AMP 指南的 LDLR 变异修改包括:(1)改变人群频率阈值;(2)划定失活变异类型;(3)功能研究标准规范;(4)共分离标准规范;(5)特定的使用和基于计算的预测工具的阈值等。

结论:在临床实验室环境中采用这些指南作为新标准,将导致 LDLR 变异分类在全球范围内采用更具循证、协调一致的方法,从而改善 FH 患者的护理。

相似文献

[1]
The Clinical Genome Resource (ClinGen) Familial Hypercholesterolemia Variant Curation Expert Panel consensus guidelines for LDLR variant classification.

Genet Med. 2022-2

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引用本文的文献

[1]
uAUG-creating variant in the LDLR gene causes mild Familial hypercholesterolemia.

Hum Genet. 2025-8-25

[2]
Genetic and Metabolic Factors of Familial Dysbetalipoproteinemia Phenotype: Insights from a Cross-Sectional Study.

Int J Mol Sci. 2025-7-30

[3]
Novel start codon variant in the 5'UTR of LDLR associated with familial hypercholesterolaemia.

Eur J Hum Genet. 2025-7-24

[4]
Functional characterization of genetic variants affecting the intracellular domains of ATP-binding cassette transporter A1 (ABCA1).

J Lipid Res. 2025-7-3

[5]
Sex and racial differences in prevalence and clinical characteristics of people living with LDLR and PCSK9 familial hypercholesterolemia genetic variants: Data from the All of Us Research program.

Am J Prev Cardiol. 2025-6-1

[6]
Correlation between clinical classification and genetic analysis of familial hypercholesterolemia in premature coronary artery disease in a cohort of Egyptian patients.

Hum Genomics. 2025-6-14

[7]
Role of Next-Generation Sequencing in Diagnosis of Familial Hypercholesterolemia in Serbia.

Diagnostics (Basel). 2025-5-12

[8]
Functional interrogation of cellular Lp(a) uptake by genome-scale CRISPR screening.

Atherosclerosis. 2025-4

[9]
Genetic Determinants of the Familial Hypercholesterolaemia Phenotype.

Ann Hum Genet. 2025-9

[10]
Large-Scale Functional Characterization of Low-Density Lipoprotein Receptor Gene Variants Improves Risk Assessment in Cardiovascular Disease.

JACC Basic Transl Sci. 2025-2

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