Department of Health Promotion and Prevention of Noncommunicable Diseases, Nacional Institute of Health Dr. Ricardo Jorge, Lisbon, Portugal; BioISI - BioSystems & Integrative Sciences Institute, Department of Chemistry and Biochemistry, Faculty of Sciences, University of Lisbon, Lisbon, Portugal.
Departments of Biomedical Data Science and Pathology, School of Medicine, Stanford University, Stanford, CA; Department of Paediatric Laboratory Medicine, The Hospital for Sick Children, Toronto Ontario, Canada.
Genet Med. 2022 Feb;24(2):293-306. doi: 10.1016/j.gim.2021.09.012. Epub 2021 Nov 30.
PURPOSE: In 2015, the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) published consensus standardized guidelines for sequence-level variant classification in Mendelian disorders. To increase accuracy and consistency, the Clinical Genome Resource Familial Hypercholesterolemia (FH) Variant Curation Expert Panel was tasked with optimizing the existing ACMG/AMP framework for disease-specific classification in FH. In this study, we provide consensus recommendations for the most common FH-associated gene, LDLR, where >2300 unique FH-associated variants have been identified. METHODS: The multidisciplinary FH Variant Curation Expert Panel met in person and through frequent emails and conference calls to develop LDLR-specific modifications of ACMG/AMP guidelines. Through iteration, pilot testing, debate, and commentary, consensus among experts was reached. RESULTS: The consensus LDLR variant modifications to existing ACMG/AMP guidelines include (1) alteration of population frequency thresholds, (2) delineation of loss-of-function variant types, (3) functional study criteria specifications, (4) cosegregation criteria specifications, and (5) specific use and thresholds for in silico prediction tools, among others. CONCLUSION: Establishment of these guidelines as the new standard in the clinical laboratory setting will result in a more evidence-based, harmonized method for LDLR variant classification worldwide, thereby improving the care of patients with FH.
目的:2015 年,美国医学遗传学与基因组学学院(ACMG)和分子病理学协会(AMP)发布了孟德尔疾病序列水平变异分类的共识标准化指南。为了提高准确性和一致性,临床基因组资源家族性高胆固醇血症(FH)变异校正专家小组被委托优化现有的 ACMG/AMP 框架,以进行 FH 疾病特异性分类。在这项研究中,我们针对最常见的 FH 相关基因 LDLR 提供了共识建议,其中已鉴定出超过 2300 种独特的 FH 相关变体。
方法:多学科 FH 变异校正专家小组通过面对面会议、频繁的电子邮件和电话会议,制定了 LDLR 特异性的 ACMG/AMP 指南修改方案。通过反复迭代、试点测试、辩论和评论,专家们达成了共识。
结果:对现有 ACMG/AMP 指南的 LDLR 变异修改包括:(1)改变人群频率阈值;(2)划定失活变异类型;(3)功能研究标准规范;(4)共分离标准规范;(5)特定的使用和基于计算的预测工具的阈值等。
结论:在临床实验室环境中采用这些指南作为新标准,将导致 LDLR 变异分类在全球范围内采用更具循证、协调一致的方法,从而改善 FH 患者的护理。
Eur J Hum Genet. 2025-7-24
Diagnostics (Basel). 2025-5-12
Atherosclerosis. 2025-4
Ann Hum Genet. 2025-9