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基于 RNA-seq 技术分析美洲大蠊小分子肽对人卵巢颗粒细胞过氧化氢诱导凋亡的抗性。

Analysis of the resistance of small peptides from Periplaneta americana to hydrogen peroxide-induced apoptosis in human ovarian granular cells based on RNA-seq.

机构信息

School of Public Health, Dali University, Dali, Yunnan Province 671000, China.

College of Mathematics and Computer Science, Dali University, Dali, Yunnan Province 671003, China.

出版信息

Gene. 2022 Mar 1;813:146120. doi: 10.1016/j.gene.2021.146120. Epub 2021 Dec 13.

Abstract

Apoptosis of ovarian granular cells is closely related with weakening fertility of women. Hence, resisting apoptosis of human ovarian granular cells is of important significance. According to previous studies, DAPI fluorescence staining experiment and Western Blot test of Caspase-3 demonstrate that small peptides from Periplaneta americana (SPPA) can improve hydrogen peroxide (HO) -induced apoptosis of human ovarian granular cells (KGN cells). However, the molecular mechanism of SPPA resistance against apoptosis of granular cells still remains unknown. In this study, key genes and signaling pathways for SPPA to resist HO-induced apoptosis of KGN cells were determined through transcriptome sequencing (RNA-seq). Experiments were divided into three groups, namely, the control group, HO group and HO + SPPA group. A total of 1196 differentially expressed genes (DEGs) were screened by comparing the control group and the HO group, and 2805 DEGs were screened by comparing the HO group and HO + SPPA group. It is important to note that 87 overlapping genes were identified upregulating in HO exposure, but downregulating in SPPA repair. Another 151 overlapping genes were identified downregulating in HO exposure, but upregulating in SPPA repair. These 238 overlapping genes have significant enrichment in multiple KEGG pathways. Among them, 13 genes play significant roles in SPPA resistance process of cell apoptosis: EIF3D, RAN, UPF1 and EIF2B4 participate in RNA transport; ACTG1, SIPA1 and CTNND1 participate in Leukocyte transendothelial migration; S100A7, S100A9, RELA and IL17RE participate in IL-17 signaling pathway; BCL2L13, EIF2AK3 and RELA participate in Mitophapy-animal. Ten genes were selected for florescence quantitative PCR (qPCR) verification and the expression level was consistent with sequencing results. Finally, a control network of SPPA resistance against the HO-induced KGN cell apoptosis was built based on the target genes screened by the RNA-seq technology. This study provides a direction and some references to further understand the molecular mechanism of SPPA resistance against the HO-induced KGN cell apoptosis.

摘要

卵巢颗粒细胞的凋亡与女性生育能力减弱密切相关。因此,抵抗人卵巢颗粒细胞的凋亡具有重要意义。根据先前的研究,DAPI 荧光染色实验和 Caspase-3 的 Western Blot 测试表明,美洲大蠊(Periplaneta americana)小肽(SPPA)可以改善人卵巢颗粒细胞(KGN 细胞)过氧化氢(HO)诱导的凋亡。然而,SPPA 抵抗颗粒细胞凋亡的分子机制仍不清楚。本研究通过转录组测序(RNA-seq)确定了 SPPA 抵抗 KGN 细胞 HO 诱导凋亡的关键基因和信号通路。实验分为三组,即对照组、HO 组和 HO+SPPA 组。通过比较对照组和 HO 组筛选出 1196 个差异表达基因(DEGs),通过比较 HO 组和 HO+SPPA 组筛选出 2805 个 DEGs。重要的是,HO 暴露上调而 SPPA 修复下调的 87 个重叠基因,HO 暴露下调而 SPPA 修复上调的 151 个重叠基因被鉴定出来。这 238 个重叠基因在多个 KEGG 通路中具有显著的富集。其中,在细胞凋亡的 SPPA 抵抗过程中,有 13 个基因发挥重要作用:EIF3D、RAN、UPF1 和 EIF2B4 参与 RNA 转运;ACTG1、SIPA1 和 CTNND1 参与白细胞穿过内皮迁移;S100A7、S100A9、RELA 和 IL17RE 参与 IL-17 信号通路;BCL2L13、EIF2AK3 和 RELA 参与线粒体自噬。选择了 10 个基因进行荧光定量 PCR(qPCR)验证,表达水平与测序结果一致。最后,基于 RNA-seq 技术筛选的靶基因构建了 SPPA 抵抗 HO 诱导 KGN 细胞凋亡的调控网络。本研究为进一步了解 SPPA 抵抗 HO 诱导 KGN 细胞凋亡的分子机制提供了一个方向和一些参考。

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