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genodive version 3.0: Easy-to-use software for the analysis of genetic data of diploids and polyploids.genodive 版本 3.0:适用于分析二倍体和多倍体遗传数据的易于使用的软件。
Mol Ecol Resour. 2020 Jul;20(4):1126-1131. doi: 10.1111/1755-0998.13145. Epub 2020 Mar 11.
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Wild GWAS-association mapping in natural populations.自然群体中的全基因组关联研究-关联映射。
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Heritability estimates from genomewide relatedness matrices in wild populations: Application to a passerine, using a small sample size.野生种群全基因组亲缘关系矩阵的遗传力估计:在雀形目鸟类中的应用,使用小样本量。
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Genomic analysis of morphometric traits in bighorn sheep using the Ovine Infinium HD SNP BeadChip.使用绵羊Infinium HD SNP基因分型芯片对大角羊形态特征进行基因组分析。
PeerJ. 2018 Feb 12;6:e4364. doi: 10.7717/peerj.4364. eCollection 2018.
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The first transcriptome of Italian wall lizard, a new tool to infer about the Island Syndrome.意大利壁蜥的首个转录组,一种推断岛屿综合征的新工具。
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Insights into the genetic architecture of morphological traits in two passerine bird species.对两种雀形目鸟类形态特征遗传结构的见解。
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连接内陆岛屿和大陆鹿鼠的遗传、形态和行为差异。

Linking genetic, morphological, and behavioural divergence between inland island and mainland deer mice.

机构信息

Département des Sciences Biologiques, Université du Québec À Montréal, Montréal, Canada.

Department of Biological Sciences, MacEwan University, Edmonton, Canada.

出版信息

Heredity (Edinb). 2022 Feb;128(2):97-106. doi: 10.1038/s41437-021-00492-z. Epub 2021 Dec 24.

DOI:10.1038/s41437-021-00492-z
PMID:34952930
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8814197/
Abstract

The island syndrome hypothesis (ISH) stipulates that, as a result of local selection pressures and restricted gene flow, individuals from island populations should differ from individuals within mainland populations. Specifically, island populations are predicted to contain individuals that are larger, less aggressive, more sociable, and that invest more in their offspring. To date, tests of the ISH have mainly compared oceanic islands to continental sites, and rarely smaller spatial scales such as inland watersheds. Here, using a novel set of genome-wide SNP markers in wild deer mice (Peromyscus maniculatus) we conducted a genomic assessment of predictions underlying the ISH in an inland riverine island system: analysing island-mainland population structure, and quantifying heritability of phenotypes thought to underlie the ISH. We found clear genomic differentiation between the island and mainland populations and moderate to high marker-based heritability estimates for overall variation in traits previously found to differ in line with the ISH between mainland and island locations. F outlier analyses highlighted 12 loci associated with differentiation between mainland and island populations. Together these results suggest that the island populations examined are on independent evolutionary trajectories, the traits considered have a genetic basis (rather than phenotypic variation being solely due to phenotypic plasticity). Coupled with the previous results showing significant phenotypic differentiation between the island and mainland groups in this system, this study suggests that the ISH can hold even on a small spatial scale.

摘要

岛屿综合征假说(ISH)规定,由于局部选择压力和有限的基因流动,来自岛屿种群的个体应该与来自大陆种群的个体有所不同。具体而言,预计岛屿种群中会有体型更大、攻击性更小、社会性更强、对后代投入更多的个体。迄今为止,ISH 的检验主要是将海洋岛屿与大陆地点进行比较,很少涉及较小的空间尺度,如内陆流域。在这里,我们使用一组新的野生鹿鼠(Peromyscus maniculatus)全基因组 SNP 标记,对内陆河流岛屿系统中 ISH 的预测进行了基因组评估:分析岛屿-大陆种群结构,并量化了被认为是 ISH 基础的表型的遗传力。我们发现岛屿和大陆种群之间存在明显的基因组分化,并且对于先前在大陆和岛屿位置之间发现的与 ISH 一致的性状的总体变异,具有中等至高的基于标记的遗传力估计。F 离群值分析突出了与大陆和岛屿种群分化相关的 12 个位点。这些结果表明,所检查的岛屿种群正在独立的进化轨迹上,所考虑的特征具有遗传基础(而不是表型变异仅仅是由于表型可塑性)。结合本研究系统中岛屿和大陆群体之间存在显著表型分化的先前结果,本研究表明,即使在较小的空间尺度上,ISH 也能成立。