Procrastination, which is defined as delaying an intended course of action despite negative outcomes, is demonstrated to have a deal with negative emotion including trait anxiety. Although highly anxious individuals showed impoverished control ability, no studies have indicated the role of self-control in the relationship between trait anxiety and procrastination, and its neural correlates. To this end, we used the sliding window method to calculate the temporal deviation of dynamic functional connectivity (FC) in 312 healthy participants who underwent the resting-state functional magnetic resonance imaging (fMRI) scanning. In line with our hypothesis, higher trait anxiety is linked to more procrastination via poorer self-control. Besides, the dynamic FC analyses showed that trait anxiety was positively correlated with dynamic FC variability in hippocampus-prefrontal cortex (HPC-PFC) pathways, including left rostral hippocampus-left superior frontal gyrus (left rHPC-left SFG), and left rHPC-right middle frontal gyrus (left rHPC--MFG). Furthermore, the structural equation modeling (SEM) uncovered a mediated role of self-control in the association between the anxiety-specific brain connectivity and procrastination. These findings suggest that the HPC-PFC pathways may reflect impoverished regulatory ability over the negative thoughts for anxious individuals, and thereby incurs more procrastination, which enhances our understanding of how trait anxiety links to procrastination.