用于同时检测感染苹果(苹果属)的四种病毒的多重逆转录聚合酶链反应检测方法的开发。

Development of multiplex RT-PCR assay for simultaneous detection of four viruses infecting apple (Malus domestica).

作者信息

Nabi S U, Madhu G S, Rao G P, Baranwal V K

机构信息

ICAR-Central Institute of Temperate Horticulture, Old Air Field Rangreth, Srinagar, India.

Division of Plant Pathology, Advanced Centre of Plant Virology, ICAR-IARI, New Delhi, India.

出版信息

Lett Appl Microbiol. 2022 Apr;74(4):586-592. doi: 10.1111/lam.13643. Epub 2022 Jan 30.

Abstract

The major viruses infecting apple cultivars throughout the world including India are apple mosaic virus (ApMV), apple stem pitting virus (ASPV), apple stem grooving virus (ASGV), apple chlorotic leaf spot virus (ACLSV), and recently, a new virus, apple necrotic mosaic virus (ApNMV), was reported from mosaic-infected apple cultivars in India. The aim of this study was to detect the ApNMV virus along with the other three viruses (ApMV, ASPV and ASGV) simultaneously by multiplex RT-PCR. Four primer-pair-produced amplicons of 670, 550, 350 and 210 bp corresponding to ApNMV, ApMV, ASPV and ASGV, respectively, were found to be specific for these viruses when tested individually. The annealing temperature (55°C), primer concentration (0·8 µl) and other components of the master mix were standardized for the development of one-step m-RT-PCR assay. The m-RT-PCR protocol developed was further validated with 30 samples from seven symptomatic or asymptomatic apple cultivars, which revealed the presence of more than one virus in these cultivars. Most of the viruses were found to be present either alone or in mixed infection; however, ASPV was more common in tested cultivars. An easy, cost-effective and rapid multiplex RT-RCR protocol was developed to detect the four viruses, which infect apple plants either in individually or together in the field. This assay will help in the surveying and indexing of apple germplasm and the distribution of all four viruses in the apple growing regions of India.

摘要

在包括印度在内的全球范围内,感染苹果品种的主要病毒有苹果花叶病毒(ApMV)、苹果茎痘病毒(ASPV)、苹果茎沟病毒(ASGV)、苹果褪绿叶斑病毒(ACLSV),最近,印度从感染花叶病的苹果品种中报道了一种新病毒——苹果坏死花叶病毒(ApNMV)。本研究的目的是通过多重逆转录聚合酶链反应(multiplex RT-PCR)同时检测ApNMV病毒以及其他三种病毒(ApMV、ASPV和ASGV)。当单独测试时,发现分别对应ApNMV、ApMV、ASPV和ASGV的四对引物产生的670、550、350和210 bp的扩增子对这些病毒具有特异性。对一步法m-RT-PCR检测方法的退火温度(55°C)、引物浓度(0·8 μl)和预混液的其他成分进行了标准化。用来自7个有症状或无症状苹果品种的30个样品对所开发的m-RT-PCR方法进行了进一步验证,结果显示这些品种中存在一种以上的病毒。大多数病毒单独存在或混合感染;然而,ASPV在测试品种中更为常见。开发了一种简便、经济高效且快速的多重RT-RCR方法来检测这四种病毒,它们在田间单独或共同感染苹果植株。该检测方法将有助于苹果种质资源的调查和检测,以及印度苹果种植区这四种病毒的分布情况。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索