Suppr超能文献

从意大利中部榛子中分离出的属于物种复合体的新菌株的基因组草图序列

Draft Genome Sequence of a New Isolate Belonging to Species Complex Collected From Hazelnut in Central Italy.

作者信息

Turco Silvia, Grottoli Alessandro, Drais Mounira Inas, De Spirito Carlo, Faino Luigi, Reverberi Massimo, Cristofori Valerio, Mazzaglia Angelo

机构信息

Dipartimento di Scienze Agrarie e Forestali, Università degli Studi della Tuscia, Viterbo, Italy.

Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria, Centro di Ricerca Difesa e Certificazione (CREA-DC), Rome, Italy.

出版信息

Front Plant Sci. 2021 Dec 16;12:788584. doi: 10.3389/fpls.2021.788584. eCollection 2021.

Abstract

In summer 2019, during a survey on the health status of a hazelnut orchard located in the Tuscia area (the province of Viterbo, Latium, Italy), nuts showing symptoms, such as brown-grayish spots at the bottom of the nuts progressing upward to the apex, and necrotic patches on the bracts and, sometimes, on the petioles, were found and collected for further studies. This syndrome is associated with the nut gray necrosis (NGN), whose main causal agent is . Aiming to increase knowledge about this fungal pathogen, the whole-genome sequencing of a strain isolated from symptomatic hazelnut was performed using long Nanopore reads technology in combination with the higher precision of the Illumina reads, generating a high-quality genome assembly. The following phylogenetic and comparative genomics analysis suggested that this isolate is caused by the species complex rather than one, as initially hypothesized. Thus, this study demonstrates that different species can infect producing the same symptomatology. In addition, it sheds light onto the genetic features of the pathogen in subject, clarifying facets about its biology, epidemiology, infection mechanisms, and host spectrum, with the future objective to develop specific and efficient control strategies.

摘要

2019年夏季,在对位于托斯卡纳地区(意大利拉齐奥大区维泰博省)的一片榛果园健康状况进行调查期间,发现并收集了出现症状的坚果,这些症状包括坚果底部出现棕灰色斑点并向上发展至顶端,苞叶上有时叶柄上出现坏死斑,以便进行进一步研究。这种综合征与坚果灰坏死(NGN)有关,其主要病原体是 。为了增加对这种真菌病原体的了解,使用长纳米孔读数技术结合Illumina读数的更高精度,对从有症状的榛果中分离出的一个菌株进行了全基因组测序,生成了高质量的基因组组装。随后的系统发育和比较基因组学分析表明,该分离株是由 物种复合体引起的,而不是最初假设的 单一物种。因此,本研究表明,不同的 物种可以感染 并产生相同的症状。此外,它揭示了该病原体的遗传特征,阐明了其生物学、流行病学、感染机制和宿主谱等方面,未来的目标是制定具体而有效的控制策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/23ef/8718101/9eb2c36beac0/fpls-12-788584-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验