Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto, 606-8522, Japan.
Institute for Glyco-core Research (iGCORE), Gifu University, 1-1 Yanagido, Gifu, 501-1194, Japan.
Protein J. 2022 Feb;41(1):71-78. doi: 10.1007/s10930-021-10036-3. Epub 2022 Jan 30.
Protein structures fluctuate in solution; therefore, proteins have multiple stable structures that are slightly different from each other. In this study, we determined the crystal structure of hen egg lysozyme refolded after denaturation at acidic pH (rHEL) and found a structure different from native HEL (nHEL). The different local conformations of the peptide bond between Asp101 and Gly102 found in the crystal structure was supported by the NMR results for nHEL and rHEL. The NMR experiments also showed shifts in the heteronuclear single quantum coherence signals derived from Thr43 and Asp52. The chemical shift change of Asp52 could be explained by the crystal structure of rHEL, showing the conformational change of Tyr53, whose phenol ring directly lies on the main chain of Asp52. The catalytic activity of rHEL was similar to that of nHEL, indicating that the conformational change had little effect on activity. In contrast, conformational changes could be detected by the binding of monoclonal antibodies against HEL. Using multiple methods, we successfully detected the unusual structure of HEL, which might be another stable structure of HEL in solution.
蛋白质在溶液中会发生结构波动,因此,蛋白质具有多种彼此略有不同的稳定结构。在本研究中,我们测定了在酸性 pH 变性后复性的鸡卵溶菌酶(rHEL)的晶体结构,发现了与天然 HEL(nHEL)不同的结构。晶体结构中 Asp101 和 Gly102 之间肽键的不同局部构象得到了 nHEL 和 rHEL 的 NMR 结果的支持。NMR 实验还显示了来自 Thr43 和 Asp52 的异核单量子相干信号的位移。Asp52 的化学位移变化可以用 rHEL 的晶体结构来解释,表明 Tyr53 的构象发生了变化,其酚环直接位于 Asp52 的主链上。rHEL 的催化活性与 nHEL 相似,表明构象变化对活性影响不大。相比之下,构象变化可以通过针对 HEL 的单克隆抗体的结合来检测到。使用多种方法,我们成功地检测到了 HEL 的异常结构,这可能是 HEL 在溶液中的另一种稳定结构。