Broussard Emilie M, Rodriguez Zachary B, Austin Christopher C
Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA; Museum of Natural Science, Louisiana State University, 119 Foster Hall, Baton Rouge, LA 70803, USA.
Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA; Museum of Natural Science, Louisiana State University, 119 Foster Hall, Baton Rouge, LA 70803, USA.
Mol Phylogenet Evol. 2022 Apr;169:107435. doi: 10.1016/j.ympev.2022.107435. Epub 2022 Feb 4.
The albumin family of proteins consists of vitamin-D binding protein/group-specific component (GC), serum albumin (ALB), alpha-fetoprotein (AFP), and afamin (AFM), which are responsible for transporting many ligands throughout the body. The albumin family proteins are physiologically and medically important, but our understanding of their functions and applications is hindered by the dearth of information regarding these proteins' evolutionary relationships and functions in non-mammalian lineages. In this study we investigate the evolution of the albumin family proteins in reptiles, using bioinformatic methods to survey available reptile genomes and transcriptomes for albumin family proteins and phylogenetically characterize their relationships. We reinforce the established evolutionary relationships among the albumin protein family in reptiles, however, they are variable in their number of domains, overall genetic sequence, and synteny. We find a novel absence of the physiologically important ALB in squamates and identify two distinct lineages of AFP, one in mammals and another in reptiles. Our study provides a comparative genomic framework for further studies identifying lineage-specific gene expansions that may compensate for the lack of serum albumin in squamates.
蛋白质的白蛋白家族由维生素 D 结合蛋白/组特异性成分(GC)、血清白蛋白(ALB)、甲胎蛋白(AFP)和 afamin(AFM)组成,它们负责在全身运输许多配体。白蛋白家族蛋白在生理和医学上都很重要,但由于缺乏有关这些蛋白在非哺乳动物谱系中的进化关系和功能的信息,我们对其功能和应用的理解受到了阻碍。在本研究中,我们利用生物信息学方法,对现有的爬行动物基因组和转录组进行调查,以寻找白蛋白家族蛋白,并对它们的关系进行系统发育表征,从而研究爬行动物中白蛋白家族蛋白的进化。我们强化了爬行动物白蛋白蛋白家族之间已确立的进化关系,然而,它们在结构域数量、整体遗传序列和同线性方面存在差异。我们发现有鳞目动物中生理上重要的 ALB 存在新的缺失,并鉴定出 AFP 的两个不同谱系,一个在哺乳动物中,另一个在爬行动物中。我们的研究为进一步研究提供了一个比较基因组框架,以确定可能补偿有鳞目动物血清白蛋白缺乏的谱系特异性基因扩增。