Yang Zhi, Dam Kim-Marie A, Bridges Michael D, Hoffmann Magnus A G, DeLaitsch Andrew T, Gristick Harry B, Escolano Amelia, Gautam Rajeev, Martin Malcolm A, Nussenzweig Michel C, Hubbell Wayne L, Bjorkman Pamela J
Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Jules Stein Eye Institute, University of California, Los Angeles, CA, USA.
Nat Commun. 2022 Feb 8;13(1):732. doi: 10.1038/s41467-022-28424-3.
Broadly-neutralizing antibodies (bNAbs) against HIV-1 Env can protect from infection. We characterize Ab1303 and Ab1573, heterologously-neutralizing CD4-binding site (CD4bs) antibodies, isolated from sequentially-immunized macaques. Ab1303/Ab1573 binding is observed only when Env trimers are not constrained in the closed, prefusion conformation. Fab-Env cryo-EM structures show that both antibodies recognize the CD4bs on Env trimer with an 'occluded-open' conformation between closed, as targeted by bNAbs, and fully-open, as recognized by CD4. The occluded-open Env trimer conformation includes outwardly-rotated gp120 subunits, but unlike CD4-bound Envs, does not exhibit V1V2 displacement, 4-stranded gp120 bridging sheet, or co-receptor binding site exposure. Inter-protomer distances within trimers measured by double electron-electron resonance spectroscopy suggest an equilibrium between occluded-open and closed Env conformations, consistent with Ab1303/Ab1573 binding stabilizing an existing conformation. Studies of Ab1303/Ab1573 demonstrate that CD4bs neutralizing antibodies that bind open Env trimers can be raised by immunization, thereby informing immunogen design and antibody therapeutic efforts.
针对HIV-1包膜糖蛋白(Env)的广泛中和抗体(bNAbs)可预防感染。我们对从顺序免疫的猕猴中分离出的异源中和CD4结合位点(CD4bs)抗体Ab1303和Ab1573进行了表征。仅当Env三聚体不在封闭的预融合构象中受到限制时,才能观察到Ab1303/Ab1573的结合。Fab-Env冷冻电镜结构表明,这两种抗体均以“封闭-开放”构象识别Env三聚体上的CD4bs,该构象介于bNAbs靶向的封闭构象和CD4识别的完全开放构象之间。封闭-开放的Env三聚体构象包括向外旋转的gp120亚基,但与CD4结合的Env不同,不表现出V1V2位移、4链gp120桥接片或共受体结合位点暴露。通过双电子-电子共振光谱测量的三聚体内原体间距离表明,封闭-开放和封闭的Env构象之间存在平衡,这与Ab1303/Ab1573结合稳定现有构象一致。对Ab1303/Ab1573的研究表明,通过免疫可以产生结合开放Env三聚体的CD4bs中和抗体,从而为免疫原设计和抗体治疗研究提供信息。