National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China.
Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, 515063, Guangdong, China.
Sci Rep. 2022 Feb 8;12(1):2104. doi: 10.1038/s41598-022-06080-3.
Complete mitochondrial genomes (mitogenomes) can provide useful information for phylogenetic relationships, gene rearrangement, and evolutionary traits. In this study, we determined the complete mitochondrial DNA sequence of the herbivorous crab Grapsus albolineatus. It is a typical metazoan mitochondrial genome. The total size is 15,583 bp, contains the entire set of 37 genes, and has an AT-rich region. Then, 23 of the 37 genes were encoded by the heavy (+) strand while 14 are encoded by the light (-) strand. Compared with the pan-crustacean ground pattern, two tRNA genes (tRNA-His and tRNA-Gln) were rearranged and the tandem duplication/random loss model was used to explain the observed gene rearrangements. The phylogenetic results showed that all Grapsidae crabs clustered together as a group. Furthermore, the monophyly of each family was well supported, with the exception of Menippidae. In general, the results obtained in this study will contribute to the better understanding of gene rearrangements in Grapsidae crab mitogenomes and provide new insights into the phylogeny of Brachyura.
完整的线粒体基因组(mitogenomes)可以为系统发育关系、基因重排和进化特征提供有用的信息。在这项研究中,我们测定了食草蟹 Grapsus albolineatus 的完整线粒体 DNA 序列。它是一种典型的后生动物线粒体基因组。总大小为 15583bp,包含整套 37 个基因,具有富含 AT 的区域。然后,37 个基因中的 23 个由重链(+)编码,14 个由轻链(-)编码。与泛甲壳动物的基本模式相比,两个 tRNA 基因(tRNA-His 和 tRNA-Gln)发生了重排,并且使用串联重复/随机丢失模型来解释观察到的基因重排。系统发育结果表明,所有 Grapsidae 蟹都聚集在一起形成一个群体。此外,每个家族的单系性都得到了很好的支持,除了 Menippidae。总的来说,本研究的结果将有助于更好地理解 Grapsidae 蟹线粒体基因组中的基因重排,并为 Brachyura 的系统发育提供新的见解。