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糖皮质激素性骨质疏松症患者椎体中环状RNA的综合分析及其分子机制

Comprehensive circRNA Analyses in Human Vertebrae of GIOP and Its Molecular Mechanism.

作者信息

Wang Linfeng, Ye Hong, Huang Douquan, Lu Chengwu, Lin Weiming, Chen Xiaojie

机构信息

Department of Orthopedics, the Affiliated Nanping First Hospital of Fujian Medical University, Nanping 353000, Fujian, China.

Department of Orthopedics, the People's Hospital of Nanping, Nanping, Fujian, China.

出版信息

Evid Based Complement Alternat Med. 2022 Feb 8;2022:4203161. doi: 10.1155/2022/4203161. eCollection 2022.

Abstract

Circular RNAs (circRNAs) are a novel class of noncoding RNAs that play important roles in human diseases. However, the regulation of circRNAs in glucocorticoid-induced osteoporosis (GIOP) has not been reported. In this study, we performed high-throughput sequencing to identify altered circRNAs in the vertebrae from GIOP patients. A total of 65 clinical samples were collected in this study. Bioinformatics algorithms were employed to predict the target relationship between circRNAs and miRNAs and the circRNAs-miRNAs regulatory network. We focused on the top 10 significantly up-/downregulated circRNAs (hsa_circ_0004906, hsa_circ_0001172, hsa_circ_0005778, hsa_circ_0004276, hsa_circ_0005729, hsa_circ_0006173, hsa_circ_0007662, hsa_circ_0001451, hsa_circ_0001564, and hsa_circ_0108735) and measured their expression by qRT-PCR in clinical samples. Bioinformatics analyses demonstrated that 87 miRNAs were predicted in upregulated circRNAs and 104 miRNAs were predicted in downregulated circRNAs. The functional enrichment analysis showed these targeted miRNAs were significantly enriched in bone metabolism-related biological processes and pathways, including the MAPK signaling pathway, positive regulation of the metabolic process and metabolic pathways, etc. Collectively, our study revealed circRNA regulation and circRNAs-miRNAs regulatory network in GIOP for the first time, which provides a new perspective on the molecular mechanism of GIOP and lays a foundation for GIOP treatment.

摘要

环状RNA(circRNAs)是一类新型的非编码RNA,在人类疾病中发挥着重要作用。然而,circRNAs在糖皮质激素诱导的骨质疏松症(GIOP)中的调控尚未见报道。在本研究中,我们进行了高通量测序,以鉴定GIOP患者椎骨中变化的circRNAs。本研究共收集了65份临床样本。采用生物信息学算法预测circRNAs与miRNAs之间的靶标关系以及circRNAs-miRNAs调控网络。我们聚焦于前10个显著上调/下调的circRNAs(hsa_circ_0004906、hsa_circ_0001172、hsa_circ_0005778、hsa_circ_0004276、hsa_circ_0005729、hsa_circ_0006173、hsa_circ_0007662、hsa_circ_0001451、hsa_circ_0001564和hsa_circ_0108735),并通过qRT-PCR检测它们在临床样本中的表达。生物信息学分析表明,上调的circRNAs中预测有87个miRNAs,下调的circRNAs中预测有104个miRNAs。功能富集分析表明,这些靶向miRNAs在骨代谢相关的生物学过程和通路中显著富集,包括丝裂原活化蛋白激酶(MAPK)信号通路、代谢过程的正调控和代谢通路等。总体而言,我们的研究首次揭示了GIOP中的circRNA调控及circRNAs-miRNAs调控网络,为GIOP的分子机制提供了新的视角,并为GIOP的治疗奠定了基础。

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