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antiSMASH 6.0: improving cluster detection and comparison capabilities.
Nucleic Acids Res. 2021 Jul 2;49(W1):W29-W35. doi: 10.1093/nar/gkab335.
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Metagenome Across a Geochemical Gradient of Indian Stone Ruins Found at Historic Sites in Tamil Nadu, India.
Microb Ecol. 2021 Feb;81(2):385-395. doi: 10.1007/s00248-020-01598-3. Epub 2020 Sep 12.
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Elucidating the ecological networks in stone-dwelling microbiomes.
Environ Microbiol. 2020 Apr;22(4):1467-1480. doi: 10.1111/1462-2920.14700. Epub 2019 Jun 20.
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TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
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antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
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NCBI prokaryotic genome annotation pipeline.
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Genomic insights into the taxonomic status of the Bacillus cereus group.
Sci Rep. 2015 Sep 16;5:14082. doi: 10.1038/srep14082.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
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Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.
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