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GWAS 在中东血统人群中揭示了一个保护肾功能的基因座——一项横断面研究。

GWAS in people of Middle Eastern descent reveals a locus protective of kidney function-a cross-sectional study.

机构信息

Lund University Diabetes Center, Lund University, Malmö, Sweden.

Department of Clinical Sciences, Lund University, Malmö, Sweden.

出版信息

BMC Med. 2022 Mar 1;20(1):76. doi: 10.1186/s12916-022-02267-7.

Abstract

BACKGROUND

Type 2 diabetes is one of the leading causes of chronic kidney failure, which increases globally and represents a significant threat to public health. People from the Middle East represent one of the largest immigrant groups in Europe today. Despite poor glucose regulation and high risk for early-onset insulin-deficient type 2 diabetes, they have better kidney function and lower rates of all-cause and cardiovascular-specific mortality compared with people of European ancestry. Here, we assessed the genetic basis of estimated glomerular filtration rate (eGFR) and other metabolic traits in people of Iraqi ancestry living in southern Sweden.

METHODS

Genome-wide association study (GWAS) analyses were performed in 1201 Iraqi-born residents of the city of Malmö for eGFR and ten other metabolic traits using linear mixed-models to account for family structure.

RESULTS

The strongest association signal was detected for eGFR in CST9 (rs13037490; P value = 2.4 × 10), a locus previously associated with cystatin C-based eGFR; importantly, the effect (major) allele here contrasts the effect (minor) allele in other populations, suggesting favorable selection at this locus. Additional novel genome-wide significant loci for eGFR (ERBB4), fasting glucose (CAMTA1, NDUFA10, TRIO, WWC1, TRAPPC9, SH3GL2, ABCC11), quantitative insulin-sensitivity check index (METTL16), and HbA1C (CAMTA1, ME1, PAK1, RORA) were identified.

CONCLUSIONS

The genetic effects discovered here may help explain why people from the Middle East have better kidney function than those of European descent. Genetic predisposition to preserved kidney function may also underlie the observed survival benefits in Middle Eastern immigrants with type 2 diabetes.

摘要

背景

2 型糖尿病是慢性肾衰竭的主要原因之一,在全球范围内呈上升趋势,对公众健康构成重大威胁。如今,中东人是欧洲最大的移民群体之一。尽管他们的血糖调节不佳,且早发胰岛素缺乏型 2 型糖尿病的风险较高,但与欧洲血统的人相比,他们的肾功能更好,全因和心血管疾病死亡率更低。在这里,我们评估了生活在瑞典南部的伊拉克裔人群中肾小球滤过率(eGFR)和其他代谢特征的遗传基础。

方法

对马尔默市 1201 名伊拉克出生的居民进行了全基因组关联研究(GWAS)分析,使用线性混合模型来评估 eGFR 和其他十种代谢特征,以考虑家庭结构。

结果

在 CST9(rs13037490;P 值=2.4×10)上检测到 eGFR 的最强关联信号,该基因座先前与基于胱抑素 C 的 eGFR 相关;重要的是,这里的效应(主要)等位基因与其他人群的效应(次要)等位基因相反,表明该基因座存在有利选择。还鉴定出 eGFR(ERBB4)、空腹血糖(CAMTA1、NDUFA10、TRIO、WWC1、TRAPPC9、SH3GL2、ABCC11)、定量胰岛素敏感性检查指数(METTL16)和 HbA1C(CAMTA1、ME1、PAK1、RORA)的其他新的全基因组显著相关位点。

结论

这里发现的遗传效应可能有助于解释为什么来自中东的人的肾功能比欧洲血统的人好。对保留肾功能的遗传易感性也可能是 2 型糖尿病中东移民观察到的生存获益的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/147f/8886846/68bba32955d8/12916_2022_2267_Fig1_HTML.jpg

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