Translational Structural Biology Group, German Center for Neurodegenerative Diseases (DZNE), Von-Siebold-Strasse 3a, D-37075 Göttingen, Germany.
Department of NMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Am Faßberg 11, D-37077 Göttingen, Germany.
Phys Chem Chem Phys. 2022 Mar 9;24(10):6169-6175. doi: 10.1039/d2cp00042c.
Biomolecular phase separation plays a key role in the spatial organization of cellular activities. Dynamic formation and rapid component exchange between phase separated cellular bodies and their environment are crucial for their function. Here, we employ a well-established phase separating model system, namely, a triethylamine (TEA)-water mixture, and develop an NMR approach to detect the exchange of scaffolding TEA molecules between separate phases and determine the underlying exchange rate. We further demonstrate how the advantageous NMR properties of fluorine nuclei provide access to otherwise inaccessible exchange processes of a client molecule. The developed NMR-based approach allows quantitative monitoring of the effect of regulatory factors on component exchange and facilitates "exchange"-based screening and optimization of small molecules against druggable biomolecular targets located inside condensed phases.
生物分子相分离在细胞活动的空间组织中起着关键作用。相分离的细胞体与其环境之间的动态形成和快速成分交换对于它们的功能至关重要。在这里,我们采用了一种成熟的相分离模型体系,即三乙胺(TEA)-水混合物,并开发了一种 NMR 方法来检测支架 TEA 分子在不同相之间的交换,并确定其基础交换率。我们进一步展示了氟核的有利 NMR 性质如何提供对客户分子的其他不可访问的交换过程的访问。所开发的基于 NMR 的方法允许定量监测调节因子对成分交换的影响,并促进针对位于凝聚相内的可成药生物分子靶标的小分子的“交换”为基础的筛选和优化。