Dam Tommy, Chouliara Manto, Junghans Victoria, Jönsson Peter
Department of Chemistry, Lund University, Lund, Sweden.
Nuffield Department of Medicine, CAMS Oxford Institute, University of Oxford, Oxford, United Kingdom.
Front Mol Biosci. 2022 Feb 18;9:833123. doi: 10.3389/fmolb.2022.833123. eCollection 2022.
Binding between protein molecules on contacting cells is essential in initiating and regulating several key biological processes. In contrast to interactions between molecules in solution, these events are restricted to the two-dimensional (2D) plane of the meeting cell surfaces. However, converting between the more commonly available binding kinetics measured in solution and the so-called 2D binding kinetics has proven a complicated task since for the latter several factors other than the protein-protein interaction per se have an impact. A few important examples of these are: protein density, membrane fluctuations, force on the bond and the use of auxiliary binding molecules. The development of model membranes, and in particular supported lipid bilayers (SLBs), has made it possible to simplify the studied contact to analyze these effects and to measure 2D binding kinetics of individual protein-protein interactions. We will in this review give an overview of, and discuss, how different SLB systems have been used for this and compare different methods to measure binding kinetics in cell-SLB contacts. Typically, the SLB is functionalized with fluorescently labelled ligands whose interaction with the corresponding receptor on a binding cell can be detected. This interaction can either be studied 1) by an accumulation of ligands in the cell-SLB contact, whose magnitude depends on the density of the proteins and binding affinity of the interaction, or 2) by tracking single ligands in the SLB, which upon interaction with a receptor result in a change of motion of the diffusing ligand. The advantages and disadvantages of other methods measuring 2D binding kinetics will also be discussed and compared to the fluorescence-based methods. Although binding kinetic measurements in cell-SLB contacts have provided novel information on how ligands interact with receptors the number of these measurements is still limited. This is influenced by the complexity of the system as well as the required experimental time. Moreover, the outcome can vary significantly between studies, highlighting the necessity for continued development of methods to study 2D binding kinetics with higher precision and ease.
接触细胞上的蛋白质分子之间的结合对于启动和调节几个关键的生物学过程至关重要。与溶液中分子间的相互作用不同,这些事件局限于相遇细胞表面的二维(2D)平面。然而,将在溶液中测量的更常见的结合动力学转换为所谓的二维结合动力学已被证明是一项复杂的任务,因为对于后者,除了蛋白质 - 蛋白质相互作用本身之外,还有几个因素会产生影响。其中一些重要的例子包括:蛋白质密度、膜波动、键上的力以及辅助结合分子的使用。模型膜的发展,特别是支撑脂质双层(SLB),使得简化所研究的接触以分析这些影响并测量单个蛋白质 - 蛋白质相互作用的二维结合动力学成为可能。在本综述中,我们将概述并讨论不同的SLB系统如何用于此目的,并比较测量细胞 - SLB接触中结合动力学的不同方法。通常,SLB用荧光标记的配体进行功能化,其与结合细胞上相应受体的相互作用可以被检测到。这种相互作用可以通过以下两种方式进行研究:(1)通过细胞 - SLB接触中配体的积累,其大小取决于蛋白质的密度和相互作用的结合亲和力;(2)通过跟踪SLB中的单个配体,其与受体相互作用会导致扩散配体的运动发生变化。还将讨论和比较测量二维结合动力学的其他方法的优缺点,并与基于荧光的方法进行比较。尽管在细胞 - SLB接触中进行的结合动力学测量已经提供了关于配体如何与受体相互作用的新信息,但这些测量的数量仍然有限。这受到系统复杂性以及所需实验时间的影响。此外,不同研究的结果可能会有很大差异,这突出了继续开发更精确、更简便地研究二维结合动力学方法的必要性。